Skip to content
Snippets Groups Projects

Check required config param are not empty

Merged Check required config param are not empty
check_config_param into dev
All threads resolved!
Merged Loraine Gueguen requested to merge check_config_param into dev
All threads resolved!
Compare
and
Show latest version
3 files
+ 984
− 23
Compare changes
  • Side-by-side
  • Inline
Files
3
workflows_phaeoexplorer/Galaxy-Workflow-load_interproscan_1org_v1.ga 0 → 100644
+ 216
− 0
{
"a_galaxy_workflow": "true",
"annotation": "",
"format-version": "0.1",
"name": "load_inteproscan_1org1_v1",
"steps": {
"0": {
"annotation": "",
"content_id": null,
"errors": null,
"id": 0,
"input_connections": {},
"inputs": [
{
"description": "",
"name": "inteproscan file org1"
}
],
"label": "inteproscan file org1",
"name": "Input dataset",
"outputs": [],
"position": {
"bottom": 319.1999969482422,
"height": 82.19999694824219,
"left": 287,
"right": 487,
"top": 237,
"width": 200,
"x": 287,
"y": 237
},
"tool_id": null,
"tool_state": "{\"optional\": false}",
"tool_version": null,
"type": "data_input",
"uuid": "3b13466d-1b81-475a-b652-183ed9d24bfa",
"workflow_outputs": [
{
"label": null,
"output_name": "output",
"uuid": "aff82f29-1971-4283-bfe8-cdab4857a215"
}
]
},
"1": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_interpro/load_interpro/2.3.6+galaxy0",
"errors": null,
"id": 1,
"input_connections": {
"input": {
"id": 0,
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Chado load InterProScan results",
"name": "analysis_id"
},
{
"description": "runtime parameter for tool Chado load InterProScan results",
"name": "input"
},
{
"description": "runtime parameter for tool Chado load InterProScan results",
"name": "organism_id"
},
{
"description": "runtime parameter for tool Chado load InterProScan results",
"name": "wait_for"
}
],
"label": "interproscan load org 1",
"name": "Chado load InterProScan results",
"outputs": [
{
"name": "results",
"type": "json"
}
],
"position": {
"bottom": 371.3999938964844,
"height": 164.39999389648438,
"left": 595,
"right": 795,
"top": 207,
"width": 200,
"x": 595,
"y": 207
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_interpro/load_interpro/2.3.6+galaxy0",
"tool_shed_repository": {
"changeset_revision": "1e54f2717e74",
"name": "chado_load_interpro",
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"parse_go\": \"false\", \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"false\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.3.6+galaxy0",
"type": "tool",
"uuid": "a084abdc-a0f4-4670-a486-4aed4e0f61fa",
"workflow_outputs": [
{
"label": null,
"output_name": "results",
"uuid": "dbaab44d-1494-4fbe-bd15-455f7cbf7307"
}
]
},
"2": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_populate_mviews/db_populate_mviews/3.2.1.0",
"errors": null,
"id": 2,
"input_connections": {
"wait_for": {
"id": 1,
"output_name": "results"
}
},
"inputs": [],
"label": null,
"name": "Populate materialized views",
"outputs": [
{
"name": "results",
"type": "txt"
}
],
"position": {
"bottom": 360.3999938964844,
"height": 154.39999389648438,
"left": 876,
"right": 1076,
"top": 206,
"width": 200,
"x": 876,
"y": 206
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_populate_mviews/db_populate_mviews/3.2.1.0",
"tool_shed_repository": {
"changeset_revision": "3c08f32a3dc1",
"name": "tripal_db_populate_mviews",
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"mview\": \"\", \"wait_for\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "3.2.1.0",
"type": "tool",
"uuid": "2acbe412-1318-46e8-a178-72f50df36a07",
"workflow_outputs": [
{
"label": "Populate Tripal materialized view(s)",
"output_name": "results",
"uuid": "08a4eec2-b95a-4c75-8116-b0fc9477812f"
}
]
},
"3": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_index/db_index/3.2.1.1",
"errors": null,
"id": 3,
"input_connections": {
"wait_for": {
"id": 2,
"output_name": "results"
}
},
"inputs": [],
"label": null,
"name": "Index Tripal data",
"outputs": [
{
"name": "results",
"type": "txt"
}
],
"position": {
"bottom": 340.6000061035156,
"height": 113.60000610351562,
"left": 1150,
"right": 1350,
"top": 227,
"width": 200,
"x": 1150,
"y": 227
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_index/db_index/3.2.1.1",
"tool_shed_repository": {
"changeset_revision": "d55a39f12dda",
"name": "tripal_db_index",
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"expose\": {\"do_expose\": \"no\", \"__current_case__\": 0}, \"queues\": \"10\", \"table\": {\"mode\": \"website\", \"__current_case__\": 0}, \"tokenizer\": \"standard\", \"wait_for\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "3.2.1.1",
"type": "tool",
"uuid": "42d782ff-9e6b-49d8-bd17-37dc67f31a18",
"workflow_outputs": [
{
"label": "Index Tripal data",
"output_name": "results",
"uuid": "8b38b48f-5d4e-49e6-ad70-748ad64dc901"
}
]
}
},
"tags": [],
"uuid": "9912daac-c00e-4d5e-a93e-a747bd1b3499",
"version": 3
}
\ No newline at end of file