Sync in wf

gga_init.py

@@ -431,9 +431,9 @@ if __name__ == "__main__":
         deploy_stack_for_current_organism.make_compose_files()
         logging.info("Successfully generated the docker-compose files for %s %s", deploy_stack_for_current_organism.genus, deploy_stack_for_current_organism.species)
 
-    # logging.info("Deploying stacks")
-    # if args.force_traefik:
-    #     deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=True)
-    # else:
-    #     deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=False)
-    # logging.info("All stacks deployed for organisms in input file %s" % args.input)
+    logging.info("Deploying stacks")
+    if args.force_traefik:
+        deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=True)
+    else:
+        deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=False)
+    logging.info("All stacks deployed for organisms in input file %s" % args.input)