Merge upstream

• merge upstream
• remove galaxy link
• add link to phaeo wbesite and genomic resources
• remove "other organisms are available at"
• fix structural annotation feature count when there is no genes (count mRNA instead)
• update readme

templates/page--front.tpl.php

@@ -148,7 +148,7 @@
                         <?php if (getenv('ENABLE_BLAST')): ?>
                             <?php
                                 $blast_list = explode("&", getenv('ENABLE_BLAST'));
-                                print_r($blast_list)
+                                print_r($blast_list);
                                 $blast_urls = array();
                                 foreach ($blast_list as $item)
                                     list($str1,$str2) = explode('=', $item, 2);