Merge upstream

• merge upstream
• remove galaxy link
• add link to phaeo wbesite and genomic resources
• remove "other organisms are available at"
• fix structural annotation feature count when there is no genes (count mRNA instead)
• update readme

templates/page--front.tpl.php

@@ -172,8 +172,8 @@
                             <?php endif; ?>
                             <?php foreach ($blast_urls as $name => $url): ?>
                               <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46">
-                                    <a href="<?php echo $url; ?>"><?php echo "$name"; ?>
-                                        target="_blank"</a></li>
+                                    <a href="<?php echo $url; ?>" target="_blank"><?php echo "$name"; ?>
+                                        </a></li>
                             <?php endforeach; ?>
                             <?php if (count($blast_urls) > 1): ?>
                                 </ul>