Merge upstream

• merge upstream
• remove galaxy link
• add link to phaeo wbesite and genomic resources
• remove "other organisms are available at"
• fix structural annotation feature count when there is no genes (count mRNA instead)
• update readme

README.md

 # ABiMS theme for Tripal
 
-Written for use with the ![the official tripal docker image](https://github.com/erasche/docker-tripal)
+Written for use with the [official tripal docker image](https://github.com/erasche/docker-tripal)
 
 ## Configuration
 
@@ -16,7 +16,7 @@ services:
       THEME_GIT_CLONE: "http://gitlab.sb-roscoff.fr/abims/e-infra/tripal_abims.git"
       THEME: "abims"
       SITE_NAME: "Spodoptera frugiperda" # Set this to the name of the species
-      ENABLE_BLAST: 1 # 1 to add links to blast form, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
+      ENABLE_BLAST: 1 # 1 to add links to blast form, some/url to specify the path (relative to tripal BASE_URL_PATH), multiple urls as "Name1=url1&Name2=url2", 0 to disable it
       ENABLE_JBROWSE: 1 # 1 to add links to jbrowse, jbrowse?data=xxx to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
       ENABLE_APOLLO: 1 # 1 to add links to apollo, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it
       ENABLE_DOWNLOAD: 1 # 1 to add links to download dir, some/url to specify the path (relative to tripal BASE_URL_PATH), 0 to disable it