From 0d438c26ca9e07e070b5ef6679d1ea8c2ae157d1 Mon Sep 17 00:00:00 2001
From: Troubardours <arthur.lebars@gmail.com>
Date: Wed, 2 Jun 2021 13:28:48 +0200
Subject: [PATCH] fixes for cases where strain and sex attributes are empty
---
gga_init.py | 5 +++++
species_data.py | 10 ++++++++--
2 files changed, 13 insertions(+), 2 deletions(-)
diff --git a/gga_init.py b/gga_init.py
index af8e2c1..99eb3f6 100755
--- a/gga_init.py
+++ b/gga_init.py
@@ -62,6 +62,11 @@ class DeploySpeciesStack(species_data.SpeciesData):
logging.critical("Cannot access %s" % self.genus_species)
sys.exit(exc)
+ print(self.strain)
+ print(self.sex)
+ print(self.strain_sex)
+ print(self.full_name)
+
# Copy the custom banner to the species dir (banner used in tripal pages)
# If the path specified is invalid (because it's empty or is still the default demo one),
# use the default banner instead
diff --git a/species_data.py b/species_data.py
index 308478e..37cb0de 100644
--- a/species_data.py
+++ b/species_data.py
@@ -102,8 +102,14 @@ class SpeciesData:
self.genus_lowercase = self.genus.lower()
self.species_lowercase = self.species.lower()
- self.strain_lowercase = self.strain.lower()
- self.sex_lowercase = self.sex.lower()
+ try:
+ self.strain_lowercase = self.strain.lower()
+ except AttributeError as exc:
+ self.strain_lowercase = None
+ try:
+ self.sex_lowercase = self.sex.lower()
+ except AttributeError as exc:
+ self.sex_lowercase = None
self.genus_uppercase = self.genus[0].upper() + self.genus_lowercase[1:]
self.genus_species = "{0}_{1}".format(self.genus_lowercase, self.species_lowercase)
--
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