From 14eac2c8f88b455eb414c3bafa7695b872d9e363 Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Wed, 12 May 2021 00:45:15 +0200
Subject: [PATCH] comment checking job state
---
gga_load_data.py | 38 +++++++++++++++++++-------------------
1 file changed, 19 insertions(+), 19 deletions(-)
diff --git a/gga_load_data.py b/gga_load_data.py
index 2d9328d..0dc2c79 100755
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -206,25 +206,25 @@ class LoadData(speciesData.SpeciesData):
time.sleep(1)
- # Wait for uploads to complete
- logging.info("Waiting for import jobs to finish... please wait")
-
- # Checking job state (only necessary if ran using SLURM)
- while True:
- try:
- # "C" state means the job is completed, no need to wait for it
- ret = subprocess.check_output("squeue | grep -v \"C debug\" | grep -v \"JOBID\" || true",
- shell=True)
- if not len(ret):
- break
- time.sleep(3)
- except subprocess.CalledProcessError as inst:
- if inst.returncode == 153: # queue is empty
- break
- else:
- raise
-
- time.sleep(10)
+ # # Wait for uploads to complete
+ # logging.info("Waiting for import jobs to finish... please wait")
+ #
+ # # Checking job state (only necessary if ran using SLURM)
+ # while True:
+ # try:
+ # # "C" state means the job is completed, no need to wait for it
+ # ret = subprocess.check_output("squeue | grep -v \"C debug\" | grep -v \"JOBID\" || true",
+ # shell=True)
+ # if not len(ret):
+ # break
+ # time.sleep(3)
+ # except subprocess.CalledProcessError as inst:
+ # if inst.returncode == 153: # queue is empty
+ # break
+ # else:
+ # raise
+ #
+ # time.sleep(10)
# Batch renaming --> Throws a critical error at the moment
# logging.info("Import finished, now renaming datasets with pretty names")
--
GitLab