From 152873411ddeb4ffeca5135c0e96395b9013bd0b Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Thu, 15 Apr 2021 11:38:03 +0200
Subject: [PATCH] added galaxy_nginx_conf writing
---
gga_init.py | 26 +++++++++++++++++++++++++-
1 file changed, 25 insertions(+), 1 deletion(-)
diff --git a/gga_init.py b/gga_init.py
index e6bc5ce..7000084 100755
--- a/gga_init.py
+++ b/gga_init.py
@@ -76,13 +76,37 @@ class DeploySpeciesStack(speciesData.SpeciesData):
logging.debug("Using default banner for Tripal pages")
self.config.pop("banner_path", None)
+
+ # Write galaxy_nginx.conf
+ try:
+ with open(os.path.abspath(os.path.join(self.script_dir, "galaxy_nginx.conf")), "w") as galaxy_nginx_conf:
+ galaxy_nginx_conf.truncate(0)
+ galaxy_nginx_conf.write("uwsgi_param QUERY_STRING $query_string;")
+ galaxy_nginx_conf.write("uwsgi_param REQUEST_METHOD $request_method;")
+ galaxy_nginx_conf.write("uwsgi_param CONTENT_TYPE $content_type;")
+ galaxy_nginx_conf.write("uwsgi_param CONTENT_LENGTH $content_length;")
+ galaxy_nginx_conf.write("uwsgi_param REQUEST_URI $request_uri;")
+ galaxy_nginx_conf.write("uwsgi_param PATH_INFO $document_uri;")
+ galaxy_nginx_conf.write("uwsgi_param DOCUMENT_ROOT $document_root;")
+ galaxy_nginx_conf.write("uwsgi_param SERVER_PROTOCOL $server_protocol;")
+ galaxy_nginx_conf.write("uwsgi_param REQUEST_SCHEME $scheme;")
+ galaxy_nginx_conf.write("uwsgi_param HTTPS $https if_not_empty;")
+ galaxy_nginx_conf.write("uwsgi_param REMOTE_ADDR $remote_addr;")
+ galaxy_nginx_conf.write("uwsgi_param REMOTE_PORT $remote_port;")
+ galaxy_nginx_conf.write("uwsgi_param SERVER_PORT $server_port;")
+ galaxy_nginx_conf.write("uwsgi_param SERVER_NAME $server_name;")
+ galaxy_nginx_conf.write("uwsgi_param HTTP_REMOTE_USER gga;")
+ except OSError as exc:
+ logging.critical("Cannot write galaxy NginX conf file (%s)" % os.path.abspath(self.script_dir))
+ sys.exit(exc)
+
# Create nginx dirs and write/re-write nginx conf
make_dirs(dir_paths_li=["./nginx", "./nginx/conf"])
try:
with open(os.path.abspath("./nginx/conf/default.conf"), 'w') as conf:
conf.write("server {\n\tlisten 80;\n\tserver_name ~.;\n\tlocation /download/ {\n\t\talias /project_data/; \n\t\tautoindex on;\n\t}\n}") # The species nginx conf
except OSError as exc:
- logging.critical("Cannot edit NginX conf file")
+ logging.critical("Cannot write NginX conf file")
sys.exit(exc)
# Return to main directory
--
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