From 19e70cf753fb23af288ca180eb53ab3f55e6c743 Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Wed, 12 May 2021 00:39:03 +0200
Subject: [PATCH] uncomment checking job state
---
gga_load_data.py | 26 +++++++++++++-------------
1 file changed, 13 insertions(+), 13 deletions(-)
diff --git a/gga_load_data.py b/gga_load_data.py
index f240f62..8ff4a82 100755
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -209,19 +209,19 @@ class LoadData(speciesData.SpeciesData):
logging.info("Waiting for import jobs to finish... please wait")
# Checking job state (only necessary if ran using SLURM)
- # while True:
- # try:
- # # "C" state means the job is completed, no need to wait for it
- # ret = subprocess.check_output("squeue | grep -v \"C debug\" | grep -v \"JOBID\" || true",
- # shell=True)
- # if not len(ret):
- # break
- # time.sleep(3)
- # except subprocess.CalledProcessError as inst:
- # if inst.returncode == 153: # queue is empty
- # break
- # else:
- # raise
+ while True:
+ try:
+ # "C" state means the job is completed, no need to wait for it
+ ret = subprocess.check_output("squeue | grep -v \"C debug\" | grep -v \"JOBID\" || true",
+ shell=True)
+ if not len(ret):
+ break
+ time.sleep(3)
+ except subprocess.CalledProcessError as inst:
+ if inst.returncode == 153: # queue is empty
+ break
+ else:
+ raise
time.sleep(10)
--
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