From 311f553a3e94288c0cc9f9e11d7ac42c6c54f25d Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Tue, 11 May 2021 21:18:54 +0200
Subject: [PATCH] fix filepath for upload_from_galaxy_fs()
---
gga_load_data.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gga_load_data.py b/gga_load_data.py
index 484bec4..e7c7892 100755
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -183,11 +183,11 @@ class LoadData(speciesData.SpeciesData):
logging.info("Skipping useless file '%s'" % single_file)
continue
- single_file_path=os.path.join(CONTAINER_DATA_DIR_ROOT,single_file)
+ single_file_path_in_container=os.path.join(CONTAINER_DATA_DIR_ROOT,os.path.single_file)
- logging.info("Adding file '%s' with type '%s' and name '%s'" % (single_file, ftype, clean_name))
+ logging.info("Adding file '%s' with type '%s' and name '%s'" % (single_file_path_in_container, ftype, clean_name))
datasets = prj_lib.upload_from_galaxy_fs(
- single_file_path,
+ single_file_path_in_container,
folder=folder,
link_data_only='link_to_files',
file_type=ftype,
--
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