From 3ffeab207d57f255396f58d3b1bd15c115f93aff Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Thu, 9 Apr 2020 16:40:57 +0200
Subject: [PATCH] Delete common-stringSubsitute.py
---
common-stringSubsitute.py | 37 -------------------------------------
1 file changed, 37 deletions(-)
delete mode 100755 common-stringSubsitute.py
diff --git a/common-stringSubsitute.py b/common-stringSubsitute.py
deleted file mode 100755
index c32a177..0000000
--- a/common-stringSubsitute.py
+++ /dev/null
@@ -1,37 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-import argparse
-import os
-import re
-import sys
-
-# Return the file obtained by replacing the occurrences of pattern by the replacement string.
-#Â Use of python method re.sub()
-# python common-stringSubsitute.py -f file -p pattern -r replacement_string
-# ex : python common-stringSubsitute.py -f file -p '(tRNA)(\w{3})(\w{3})' -r '\g<1>-\g<2>(\g<3>)'
-
-if __name__ == '__main__':
-
- #Get arguments
- parser = argparse.ArgumentParser(description="Return the file obtained by replacing the occurrences of pattern by the replacement string. Use of python method re.sub(). Example: python common-stringSubsitute.py -f file -p '(tRNA)(\w{3})(\w{3})' -r '\g<1>-\g<2>(\g<3>)'")
- parser.add_argument('-i','--infile', help='Input file', required=True)
- parser.add_argument('-o','--outfile', help='Output file', default='outfile')
- parser.add_argument('-p','--pattern', help='Pattern string to be replaced', required=True)
- parser.add_argument('-r','--repl', help='Replacement string', required=True)
- args = parser.parse_args()
-
- infilename=args.infile
- outfilename=args.outfile
- pattern=args.pattern
- repl=args.repl
-
- infile=open(infilename,'r')
- outfile=open(outfilename,'w')
-
- lines=infile.readlines()
-
- for line in lines :
- line_out=re.sub(pattern,repl,line)
- outfile.write(line_out)
-
- outfile.close()
\ No newline at end of file
--
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