From 40d006ab4511b31f7a3399aea04998a240a70459 Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Thu, 6 May 2021 11:55:21 +0200
Subject: [PATCH] Add file's last modified date to the new gff filename
---
gga_get_data.py | 8 +++++++-
1 file changed, 7 insertions(+), 1 deletion(-)
diff --git a/gga_get_data.py b/gga_get_data.py
index 20ec80d..8bc092d 100755
--- a/gga_get_data.py
+++ b/gga_get_data.py
@@ -91,6 +91,12 @@ class GetData(speciesData.SpeciesData):
logging.info("src_data directory tree generated for %s" % self.full_name)
+ def get_last_modified_time_string(self, filePath):
+ # give the last modification date for the file, with format '20190130'
+ lastModifiedTimestamp = os.path.getmtime(filePath)
+ lastModifiedTimeStructure = time.localtime(lastModifiedTimestamp)
+ lastModifiedDate = time.strftime("%Y%m%d", lastModifiedTimeStructure)
+ return lastModifiedDate
def get_source_data_files_from_path(self):
"""
@@ -137,7 +143,7 @@ class GetData(speciesData.SpeciesData):
elif k in annotation_datasets:
dataset_fname = ""
if k == "gff_path":
- dataset_fname = "{0}_OGS{1}.gff".format(self.dataset_prefix, self.ogs_version)
+ dataset_fname = "{0}_OGS{1}_{2}.gff".format(self.dataset_prefix, self.ogs_version, self.get_last_modified_time_string(os.path.abspath(v)))
elif k == "transcripts_path":
dataset_fname = "{0}_OGS{1}_transcripts.fasta".format(self.dataset_prefix, self.ogs_version)
elif k == "proteins_path":
--
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