From 4c56371de7e5c311e624b6427a9d2be3bddd5bc7 Mon Sep 17 00:00:00 2001
From: Troubardours <arthur.lebars@gmail.com>
Date: Thu, 3 Jun 2021 11:53:57 +0200
Subject: [PATCH] fixes for cases where strain and sex attributes are empty
---
species_data.py | 3 +++
1 file changed, 3 insertions(+)
diff --git a/species_data.py b/species_data.py
index 0882881..f2a3e7a 100644
--- a/species_data.py
+++ b/species_data.py
@@ -129,6 +129,9 @@ class SpeciesData:
self.sex_lowercase])["not_empty"])
self.dataset_prefix = self.strain_sex
+ # If both strain and sex are empty attributes, change the dataset prefix to nothing instead of "_"
+ if self.dataset_prefix == "_":
+ self.dataset_prefix = ""
self.genome_filename = "{0}_v{1}.fasta".format(self.dataset_prefix, self.genome_version)
self.gff_filename = "{0}_OGS{1}_{2}.gff".format(self.dataset_prefix, self.ogs_version, constants.DATA_DATE.replace("-",""))
--
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