diff --git a/utilities.py b/utilities.py index b23ec215097a6ac252f400486e5c51b189ee19b5..fceeca9616d9454690330427600b1198f1a0c693 100755 --- a/utilities.py +++ b/utilities.py @@ -196,28 +196,28 @@ def create_org_param_dict_from_constants(): """ org_param_dict={} - org_param_dict[constants.ORG_PARAM_NAME] = constants.ORG_PARAM_NAME - org_param_dict[constants.ORG_PARAM_DESC] = constants.ORG_PARAM_DESC - org_param_dict[constants.ORG_PARAM_DESC_GENUS] = constants.ORG_PARAM_DESC_GENUS - org_param_dict[constants.ORG_PARAM_DESC_SPECIES] = constants.ORG_PARAM_DESC_SPECIES - org_param_dict[constants.ORG_PARAM_DESC_SEX] = constants.ORG_PARAM_DESC_SEX - org_param_dict[constants.ORG_PARAM_DESC_STRAIN] = constants.ORG_PARAM_DESC_STRAIN - org_param_dict[constants.ORG_PARAM_DESC_COMMON_NAME] = constants.ORG_PARAM_DESC_COMMON_NAME - org_param_dict[constants.ORG_PARAM_DESC_ORIGIN] = constants.ORG_PARAM_DESC_ORIGIN - org_param_dict[constants.ORG_PARAM_DESC_MAIN_SPECIES] = constants.ORG_PARAM_DESC_MAIN_SPECIES - org_param_dict[constants.ORG_PARAM_DATA] = constants.ORG_PARAM_DATA - org_param_dict[constants.ORG_PARAM_DATA_GENOME_PATH] = constants.ORG_PARAM_DATA_GENOME_PATH - org_param_dict[constants.ORG_PARAM_DATA_TRANSCRIPTS_PATH] = constants.ORG_PARAM_DATA_TRANSCRIPTS_PATH - org_param_dict[constants.ORG_PARAM_DATA_PROTEINS_PATH] = constants.ORG_PARAM_DATA_PROTEINS_PATH - org_param_dict[constants.ORG_PARAM_DATA_GFF_PATH] = constants.ORG_PARAM_DATA_GFF_PATH - org_param_dict[constants.ORG_PARAM_DATA_INTERPRO_PATH] = constants.ORG_PARAM_DATA_INTERPRO_PATH - org_param_dict[constants.ORG_PARAM_DATA_ORTHOFINDER_PATH] = constants.ORG_PARAM_DATA_ORTHOFINDER_PATH - org_param_dict[constants.ORG_PARAM_DATA_BLASTP_PATH] = constants.ORG_PARAM_DATA_BLASTP_PATH - org_param_dict[constants.ORG_PARAM_DATA_BLASTX_PATH] = constants.ORG_PARAM_DATA_BLASTX_PATH - org_param_dict[constants.ORG_PARAM_DATA_GENOME_VERSION] = constants.ORG_PARAM_DATA_GENOME_VERSION - org_param_dict[constants.ORG_PARAM_DATA_OGS_VERSION] = constants.ORG_PARAM_DATA_GENOME_VERSION - org_param_dict[constants.ORG_PARAM_DATA_PERFORMED_BY] = constants.ORG_PARAM_DATA_PERFORMED_BY - org_param_dict[constants.ORG_PARAM_SERVICES] = constants.ORG_PARAM_SERVICES - org_param_dict[constants.ORG_PARAM_SERVICES_BLAST] = constants.ORG_PARAM_SERVICES_BLAST + org_param_dict["org_param_name"] = constants.ORG_PARAM_NAME + org_param_dict["org_param_desc"] = constants.ORG_PARAM_DESC + org_param_dict["org_param_desc_genus"] = constants.ORG_PARAM_DESC_GENUS + org_param_dict["org_param_desc_species"] = constants.ORG_PARAM_DESC_SPECIES + org_param_dict["org_param_desc_sex"] = constants.ORG_PARAM_DESC_SEX + org_param_dict["org_param_desc_strain"] = constants.ORG_PARAM_DESC_STRAIN + org_param_dict["org_param_desc_common_name"] = constants.ORG_PARAM_DESC_COMMON_NAME + org_param_dict["org_param_desc_origin"] = constants.ORG_PARAM_DESC_ORIGIN + org_param_dict["org_param_desc_main_species"] = constants.ORG_PARAM_DESC_MAIN_SPECIES + org_param_dict["org_param_data"] = constants.ORG_PARAM_DATA + org_param_dict["org_param_data_genome_path"] = constants.ORG_PARAM_DATA_GENOME_PATH + org_param_dict["org_param_data_transcripts_path"] = constants.ORG_PARAM_DATA_TRANSCRIPTS_PATH + org_param_dict["org_param_data_proteins_path"] = constants.ORG_PARAM_DATA_PROTEINS_PATH + org_param_dict["org_param_data_gff_path"] = constants.ORG_PARAM_DATA_GFF_PATH + org_param_dict["org_param_data_interpro_path"] = constants.ORG_PARAM_DATA_INTERPRO_PATH + org_param_dict["org_param_data_orthofinder_path"] = constants.ORG_PARAM_DATA_ORTHOFINDER_PATH + org_param_dict["org_param_data_blastp_path"] = constants.ORG_PARAM_DATA_BLASTP_PATH + org_param_dict["org_param_data_blastx_path"] = constants.ORG_PARAM_DATA_BLASTX_PATH + org_param_dict["org_param_data_genome_version"] = constants.ORG_PARAM_DATA_GENOME_VERSION + org_param_dict["org_param_data_ogs_version"] = constants.ORG_PARAM_DATA_GENOME_VERSION + org_param_dict["org_param_data_performed_by"] = constants.ORG_PARAM_DATA_PERFORMED_BY + org_param_dict["org_param_services"] = constants.ORG_PARAM_SERVICES + org_param_dict["org_param_services_blast"] = constants.ORG_PARAM_SERVICES_BLAST return org_param_dict \ No newline at end of file