From 4c7524f379f2bdc4900a59486912e9d4f4cc3e11 Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Sat, 15 May 2021 17:29:07 +0200
Subject: [PATCH] fix keys in create_org_param_dict_from_constants()
---
utilities.py | 46 +++++++++++++++++++++++-----------------------
1 file changed, 23 insertions(+), 23 deletions(-)
diff --git a/utilities.py b/utilities.py
index b23ec21..fceeca9 100755
--- a/utilities.py
+++ b/utilities.py
@@ -196,28 +196,28 @@ def create_org_param_dict_from_constants():
"""
org_param_dict={}
- org_param_dict[constants.ORG_PARAM_NAME] = constants.ORG_PARAM_NAME
- org_param_dict[constants.ORG_PARAM_DESC] = constants.ORG_PARAM_DESC
- org_param_dict[constants.ORG_PARAM_DESC_GENUS] = constants.ORG_PARAM_DESC_GENUS
- org_param_dict[constants.ORG_PARAM_DESC_SPECIES] = constants.ORG_PARAM_DESC_SPECIES
- org_param_dict[constants.ORG_PARAM_DESC_SEX] = constants.ORG_PARAM_DESC_SEX
- org_param_dict[constants.ORG_PARAM_DESC_STRAIN] = constants.ORG_PARAM_DESC_STRAIN
- org_param_dict[constants.ORG_PARAM_DESC_COMMON_NAME] = constants.ORG_PARAM_DESC_COMMON_NAME
- org_param_dict[constants.ORG_PARAM_DESC_ORIGIN] = constants.ORG_PARAM_DESC_ORIGIN
- org_param_dict[constants.ORG_PARAM_DESC_MAIN_SPECIES] = constants.ORG_PARAM_DESC_MAIN_SPECIES
- org_param_dict[constants.ORG_PARAM_DATA] = constants.ORG_PARAM_DATA
- org_param_dict[constants.ORG_PARAM_DATA_GENOME_PATH] = constants.ORG_PARAM_DATA_GENOME_PATH
- org_param_dict[constants.ORG_PARAM_DATA_TRANSCRIPTS_PATH] = constants.ORG_PARAM_DATA_TRANSCRIPTS_PATH
- org_param_dict[constants.ORG_PARAM_DATA_PROTEINS_PATH] = constants.ORG_PARAM_DATA_PROTEINS_PATH
- org_param_dict[constants.ORG_PARAM_DATA_GFF_PATH] = constants.ORG_PARAM_DATA_GFF_PATH
- org_param_dict[constants.ORG_PARAM_DATA_INTERPRO_PATH] = constants.ORG_PARAM_DATA_INTERPRO_PATH
- org_param_dict[constants.ORG_PARAM_DATA_ORTHOFINDER_PATH] = constants.ORG_PARAM_DATA_ORTHOFINDER_PATH
- org_param_dict[constants.ORG_PARAM_DATA_BLASTP_PATH] = constants.ORG_PARAM_DATA_BLASTP_PATH
- org_param_dict[constants.ORG_PARAM_DATA_BLASTX_PATH] = constants.ORG_PARAM_DATA_BLASTX_PATH
- org_param_dict[constants.ORG_PARAM_DATA_GENOME_VERSION] = constants.ORG_PARAM_DATA_GENOME_VERSION
- org_param_dict[constants.ORG_PARAM_DATA_OGS_VERSION] = constants.ORG_PARAM_DATA_GENOME_VERSION
- org_param_dict[constants.ORG_PARAM_DATA_PERFORMED_BY] = constants.ORG_PARAM_DATA_PERFORMED_BY
- org_param_dict[constants.ORG_PARAM_SERVICES] = constants.ORG_PARAM_SERVICES
- org_param_dict[constants.ORG_PARAM_SERVICES_BLAST] = constants.ORG_PARAM_SERVICES_BLAST
+ org_param_dict["org_param_name"] = constants.ORG_PARAM_NAME
+ org_param_dict["org_param_desc"] = constants.ORG_PARAM_DESC
+ org_param_dict["org_param_desc_genus"] = constants.ORG_PARAM_DESC_GENUS
+ org_param_dict["org_param_desc_species"] = constants.ORG_PARAM_DESC_SPECIES
+ org_param_dict["org_param_desc_sex"] = constants.ORG_PARAM_DESC_SEX
+ org_param_dict["org_param_desc_strain"] = constants.ORG_PARAM_DESC_STRAIN
+ org_param_dict["org_param_desc_common_name"] = constants.ORG_PARAM_DESC_COMMON_NAME
+ org_param_dict["org_param_desc_origin"] = constants.ORG_PARAM_DESC_ORIGIN
+ org_param_dict["org_param_desc_main_species"] = constants.ORG_PARAM_DESC_MAIN_SPECIES
+ org_param_dict["org_param_data"] = constants.ORG_PARAM_DATA
+ org_param_dict["org_param_data_genome_path"] = constants.ORG_PARAM_DATA_GENOME_PATH
+ org_param_dict["org_param_data_transcripts_path"] = constants.ORG_PARAM_DATA_TRANSCRIPTS_PATH
+ org_param_dict["org_param_data_proteins_path"] = constants.ORG_PARAM_DATA_PROTEINS_PATH
+ org_param_dict["org_param_data_gff_path"] = constants.ORG_PARAM_DATA_GFF_PATH
+ org_param_dict["org_param_data_interpro_path"] = constants.ORG_PARAM_DATA_INTERPRO_PATH
+ org_param_dict["org_param_data_orthofinder_path"] = constants.ORG_PARAM_DATA_ORTHOFINDER_PATH
+ org_param_dict["org_param_data_blastp_path"] = constants.ORG_PARAM_DATA_BLASTP_PATH
+ org_param_dict["org_param_data_blastx_path"] = constants.ORG_PARAM_DATA_BLASTX_PATH
+ org_param_dict["org_param_data_genome_version"] = constants.ORG_PARAM_DATA_GENOME_VERSION
+ org_param_dict["org_param_data_ogs_version"] = constants.ORG_PARAM_DATA_GENOME_VERSION
+ org_param_dict["org_param_data_performed_by"] = constants.ORG_PARAM_DATA_PERFORMED_BY
+ org_param_dict["org_param_services"] = constants.ORG_PARAM_SERVICES
+ org_param_dict["org_param_services_blast"] = constants.ORG_PARAM_SERVICES_BLAST
return org_param_dict
\ No newline at end of file
--
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