diff --git a/runWorkflowPhaeo.py b/runWorkflowPhaeo.py index 1aede4a03d60106c67aede5e582ff3285582f498..286a3b8f34f0f9f675c75285902267ff43860b9f 100644 --- a/runWorkflowPhaeo.py +++ b/runWorkflowPhaeo.py @@ -41,12 +41,12 @@ class RunWorkflow(speciesData.SpeciesData): def set_galaxy_instance(self, config): # Set the instance url attribute --> TODO: the localhost rule in the docker-compose still doesn't work on scratchgmodv1 - instance_url = "http://localhost:{0}/sp/{1}/galaxy/".format( + self.instance_url = "http://localhost:{0}/sp/{1}/galaxy/".format( config[constants.CONF_ALL_HTTP_PORT], self.genus_species) self.instance = utilities_bioblend.get_galaxy_instance( - instance_url=instance_url, + instance_url=self.instance_url, email=config[constants.CONF_GALAXY_DEFAULT_ADMIN_EMAIL], password=config[constants.CONF_GALAXY_DEFAULT_ADMIN_PASSWORD], )