From 5647aad88f744915cb632108a7252a506e73815c Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Sun, 30 May 2021 22:48:42 +0200
Subject: [PATCH] fix instance_url
---
runWorkflowPhaeo.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/runWorkflowPhaeo.py b/runWorkflowPhaeo.py
index 1aede4a..286a3b8 100644
--- a/runWorkflowPhaeo.py
+++ b/runWorkflowPhaeo.py
@@ -41,12 +41,12 @@ class RunWorkflow(speciesData.SpeciesData):
def set_galaxy_instance(self, config):
# Set the instance url attribute --> TODO: the localhost rule in the docker-compose still doesn't work on scratchgmodv1
- instance_url = "http://localhost:{0}/sp/{1}/galaxy/".format(
+ self.instance_url = "http://localhost:{0}/sp/{1}/galaxy/".format(
config[constants.CONF_ALL_HTTP_PORT],
self.genus_species)
self.instance = utilities_bioblend.get_galaxy_instance(
- instance_url=instance_url,
+ instance_url=self.instance_url,
email=config[constants.CONF_GALAXY_DEFAULT_ADMIN_EMAIL],
password=config[constants.CONF_GALAXY_DEFAULT_ADMIN_PASSWORD],
)
--
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