From 58c3c8216bc838b95cde6e93ffc542de11b26fed Mon Sep 17 00:00:00 2001
From: alebars_sb <arthur.le-bars@sb-roscoff.fr>
Date: Thu, 29 Jul 2021 09:46:32 +0200
Subject: [PATCH] Fix for bioblend get_datasets method throwing ConnectionError
---
gga_run_workflow_phaeo_blast_interpro.py | 4 ++--
utilities_bioblend.py | 1 +
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/gga_run_workflow_phaeo_blast_interpro.py b/gga_run_workflow_phaeo_blast_interpro.py
index 30579fc..5861390 100644
--- a/gga_run_workflow_phaeo_blast_interpro.py
+++ b/gga_run_workflow_phaeo_blast_interpro.py
@@ -298,8 +298,8 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
blastp_ldda_id = ldda_id
elif ldda_name.endswith(self.blastx_filename):
blastx_ldda_id = ldda_id
-
- hda_list = self.instance.datasets.get_datasets(self.history_id)
+
+ hda_list = self.instance.datasets.get_datasets()
# Finding datasets in history (matching datasets names)
for hda in hda_list:
hda_name = hda["name"]
diff --git a/utilities_bioblend.py b/utilities_bioblend.py
index 4e000d1..e918308 100644
--- a/utilities_bioblend.py
+++ b/utilities_bioblend.py
@@ -150,6 +150,7 @@ def install_repository_revision(instance, tool_id, version, changeset_revision):
install_repository_dependencies=False,
install_resolver_dependencies=True)
+
def install_workflow_tools(instance, workflow_path):
"""
Read a .ga file to extract the information about the different tools called.
--
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