diff --git a/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_1org_v2.ga b/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_1org_v2.ga
index 4705eed3f39f775032715437bec94c66beb7a7a7..224fee2d0a7e8750d39a6ec13b9303689fc6221a 100644
--- a/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_1org_v2.ga
+++ b/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_1org_v2.ga
@@ -20,14 +20,14 @@
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 347.8000030517578,
+ "bottom": 399.8000030517578,
"height": 61.80000305175781,
- "left": 399.5,
- "right": 599.5,
- "top": 286,
+ "left": 248,
+ "right": 448,
+ "top": 338,
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- "x": 399.5,
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+ "x": 248,
+ "y": 338
},
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"tool_state": "{\"optional\": false}",
@@ -38,7 +38,7 @@
{
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"output_name": "output",
- "uuid": "ffe26b0d-c0a0-480f-9dab-9f34af0ebb87"
+ "uuid": "3a108a07-b9ae-4ef3-b221-976975ed917d"
}
]
},
@@ -58,14 +58,14 @@
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 528.8000030517578,
+ "bottom": 580.8000030517578,
"height": 61.80000305175781,
- "left": 677.5,
- "right": 877.5,
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+ "left": 526,
+ "right": 726,
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"width": 200,
- "x": 677.5,
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@@ -76,7 +76,7 @@
{
"label": null,
"output_name": "output",
- "uuid": "e30138ba-aeef-4f31-a685-741a14a85f4f"
+ "uuid": "e18719e2-1eda-4277-9882-22dca5376585"
}
]
},
@@ -96,14 +96,14 @@
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 579.1999969482422,
+ "bottom": 631.1999969482422,
"height": 82.19999694824219,
- "left": 955.5,
- "right": 1155.5,
- "top": 497,
+ "left": 804,
+ "right": 1004,
+ "top": 549,
"width": 200,
- "x": 955.5,
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+ "x": 804,
+ "y": 549
},
"tool_id": null,
"tool_state": "{\"optional\": false}",
@@ -114,7 +114,7 @@
{
"label": null,
"output_name": "output",
- "uuid": "d3ed4a36-00f3-4471-8454-397ff678da43"
+ "uuid": "f6e0c6a8-a63a-4774-8f21-2d4bb5fbbd9a"
}
]
},
@@ -156,14 +156,14 @@
}
],
"position": {
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+ "bottom": 481.3999938964844,
"height": 164.39999389648438,
- "left": 677.5,
- "right": 877.5,
- "top": 265,
+ "left": 526,
+ "right": 726,
+ "top": 317,
"width": 200,
- "x": 677.5,
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+ "x": 526,
+ "y": 317
},
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"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_blast/load_blast/2.3.7+galaxy0",
@@ -173,15 +173,15 @@
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
- "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"blastdb_id\": \"176\", \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"false\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+ "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"blastdb_id\": \"176\", \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"true\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.3.7+galaxy0",
"type": "tool",
- "uuid": "65eb053e-432b-4937-8520-10ea470be08b",
+ "uuid": "4c410cb0-b293-4e93-aa00-6f83c03e3fb1",
"workflow_outputs": [
{
"label": null,
"output_name": "results",
- "uuid": "4e2f04a8-5900-48df-bcbe-d7565f12d2e4"
+ "uuid": "af958d73-5c95-412d-bf76-2411d3f656b5"
}
]
},
@@ -227,14 +227,14 @@
}
],
"position": {
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+ "bottom": 512.3999938964844,
"height": 164.39999389648438,
- "left": 957.5,
- "right": 1157.5,
- "top": 296,
+ "left": 806,
+ "right": 1006,
+ "top": 348,
"width": 200,
- "x": 957.5,
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+ "x": 806,
+ "y": 348
},
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"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_blast/load_blast/2.3.7+galaxy0",
@@ -244,15 +244,15 @@
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
- "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"blastdb_id\": \"176\", \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"false\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+ "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"blastdb_id\": \"176\", \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"true\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.3.7+galaxy0",
"type": "tool",
- "uuid": "cf0e8155-2b66-4e31-95a3-23ed48c5064f",
+ "uuid": "5ef50752-ba0e-4aaa-9c6f-4a4751e70cab",
"workflow_outputs": [
{
"label": null,
"output_name": "results",
- "uuid": "5f713e6f-5a53-4d34-b2f0-4e750b2532e9"
+ "uuid": "9fd34a16-6f09-4251-9170-759d41984e7f"
}
]
},
@@ -298,14 +298,14 @@
}
],
"position": {
- "bottom": 490.3999938964844,
+ "bottom": 542.3999938964844,
"height": 164.39999389648438,
- "left": 1234.5,
- "right": 1434.5,
- "top": 326,
+ "left": 1083,
+ "right": 1283,
+ "top": 378,
"width": 200,
- "x": 1234.5,
- "y": 326
+ "x": 1083,
+ "y": 378
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/chado_load_interpro/load_interpro/2.3.7+galaxy0",
@@ -315,15 +315,15 @@
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
- "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"parse_go\": \"false\", \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"false\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+ "tool_state": "{\"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"input\": {\"__class__\": \"RuntimeValue\"}, \"match_on_name\": \"false\", \"organism_id\": {\"__class__\": \"RuntimeValue\"}, \"parse_go\": \"false\", \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"query_type\": \"polypeptide\", \"re_name\": \"\", \"skip_missing\": \"true\", \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.3.7+galaxy0",
"type": "tool",
- "uuid": "42913a7a-6fa7-41ac-85db-6d7db71e15d6",
+ "uuid": "b01233f0-ffb8-4b76-b183-014a11610980",
"workflow_outputs": [
{
"label": null,
"output_name": "results",
- "uuid": "d54e098f-9fda-43a5-91d5-6e426c1b17d8"
+ "uuid": "0512f166-2f34-4b58-b969-db57d3e60b5d"
}
]
},
@@ -353,14 +353,14 @@
}
],
"position": {
- "bottom": 484.3999938964844,
+ "bottom": 536.3999938964844,
"height": 154.39999389648438,
- "left": 1511.5,
- "right": 1711.5,
- "top": 330,
+ "left": 1360,
+ "right": 1560,
+ "top": 382,
"width": 200,
- "x": 1511.5,
- "y": 330
+ "x": 1360,
+ "y": 382
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_analysis_sync/analysis_sync/3.2.1.0",
@@ -378,7 +378,7 @@
{
"label": "Synchronize Analysis into Tripal",
"output_name": "results",
- "uuid": "01b49a10-ea75-43fe-bdc7-86a917530f78"
+ "uuid": "3da507ff-f38d-43d8-9034-15f0c6b794ef"
}
]
},
@@ -408,14 +408,14 @@
}
],
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+ "bottom": 536.3999938964844,
"height": 154.39999389648438,
- "left": 1789.5,
- "right": 1989.5,
- "top": 330,
+ "left": 1638,
+ "right": 1838,
+ "top": 382,
"width": 200,
- "x": 1789.5,
- "y": 330
+ "x": 1638,
+ "y": 382
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_analysis_sync/analysis_sync/3.2.1.0",
@@ -433,7 +433,7 @@
{
"label": "Synchronize Analysis into Tripal",
"output_name": "results",
- "uuid": "55780306-9110-4316-b02e-9ea3ea75f257"
+ "uuid": "22863257-efc0-44be-b964-75ef973f102f"
}
]
},
@@ -463,14 +463,14 @@
}
],
"position": {
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+ "bottom": 536.3999938964844,
"height": 154.39999389648438,
- "left": 2067.5,
- "right": 2267.5,
- "top": 330,
+ "left": 1916,
+ "right": 2116,
+ "top": 382,
"width": 200,
- "x": 2067.5,
- "y": 330
+ "x": 1916,
+ "y": 382
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_analysis_sync/analysis_sync/3.2.1.0",
@@ -488,7 +488,7 @@
{
"label": "Synchronize Analysis into Tripal",
"output_name": "results",
- "uuid": "b17d6020-0607-41b0-a113-f67b0a4bfbfa"
+ "uuid": "f75eb1b1-363a-4745-bd2e-6aeb96b0bd90"
}
]
},
@@ -513,14 +513,14 @@
}
],
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+ "bottom": 536.3999938964844,
"height": 154.39999389648438,
- "left": 2345.5,
- "right": 2545.5,
- "top": 330,
+ "left": 2194,
+ "right": 2394,
+ "top": 382,
"width": 200,
- "x": 2345.5,
- "y": 330
+ "x": 2194,
+ "y": 382
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_populate_mviews/db_populate_mviews/3.2.1.0",
@@ -538,7 +538,7 @@
{
"label": "Populate Tripal materialized view(s)",
"output_name": "results",
- "uuid": "25f066df-0d6a-483f-ae50-ffe5fda61a81"
+ "uuid": "77b6d054-85f8-4796-b4d8-7f42c1ea2183"
}
]
},
@@ -563,14 +563,14 @@
}
],
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+ "bottom": 537.6000061035156,
"height": 113.60000610351562,
- "left": 2623.5,
- "right": 2823.5,
- "top": 372,
+ "left": 2472,
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+ "top": 424,
"width": 200,
- "x": 2623.5,
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+ "x": 2472,
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"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_index/db_index/3.2.1.1",
@@ -588,12 +588,12 @@
{
"label": "Index Tripal data",
"output_name": "results",
- "uuid": "908a182c-656a-4c59-b23e-3df62b9bada3"
+ "uuid": "0f5d3e50-ae4a-468e-afd1-27793fc198f3"
}
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}
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"tags": [],
- "uuid": "9d556e1e-8d18-4625-abed-233b2e75ee84",
- "version": 3
+ "uuid": "3fefa119-c814-43e4-a774-321a0cfb1637",
+ "version": 2
}
\ No newline at end of file
diff --git a/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_2org_v2.ga b/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_2org_v2.ga
index ca2f6548586ff2592a88affbd50a9bbbd05799f6..cd5d1ad46630bb2cc88ba5f95e0762135080e3b6 100644
--- a/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_2org_v2.ga
+++ b/workflows_phaeoexplorer/Galaxy-Workflow-load_blast_interproscan_results_2org_v2.ga
@@ -13,32 +13,32 @@
"inputs": [
{
"description": "",
- "name": "blastp file org1"
+ "name": "blastx file org1"
}
],
- "label": "blastp file org1",
+ "label": "blastx file org1",
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 340.3000030517578,
+ "bottom": 411.8000030517578,
"height": 61.80000305175781,
- "left": -186.5,
- "right": 13.5,
- "top": 278.5,
+ "left": 9,
+ "right": 209,
+ "top": 350,
"width": 200,
- "x": -186.5,
- "y": 278.5
+ "x": 9,
+ "y": 350
},
"tool_id": null,
"tool_state": "{\"optional\": false}",
"tool_version": null,
"type": "data_input",
- "uuid": "48fcc878-732f-45a7-8b50-cb9ad87069a7",
+ "uuid": "636feac8-efd9-4068-aafa-8957c0fa86f7",
"workflow_outputs": [
{
"label": null,
"output_name": "output",
- "uuid": "1b577d77-0c69-469d-9990-329831f74943"
+ "uuid": "92a72253-224b-4b67-9760-77472aa1c815"
}
]
},
@@ -58,14 +58,14 @@
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 521.3000030517578,
+ "bottom": 381.8000030517578,
"height": 61.80000305175781,
- "left": 91.5,
- "right": 291.5,
- "top": 459.5,
+ "left": -269,
+ "right": -69,
+ "top": 320,
"width": 200,
- "x": 91.5,
- "y": 459.5
+ "x": -269,
+ "y": 320
},
"tool_id": null,
"tool_state": "{\"optional\": false}",
@@ -76,7 +76,7 @@
{
"label": null,
"output_name": "output",
- "uuid": "7067ca60-4c52-4a75-8b8e-6dfd3cce30b2"
+ "uuid": "b4cbb536-f6ba-49f0-8690-7f602156468a"
}
]
},
@@ -89,32 +89,32 @@
"inputs": [
{
"description": "",
- "name": "blastx file org1"
+ "name": "blastx file org2"
}
],
- "label": "blastx file org1",
+ "label": "blastx file org2",
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 551.3000030517578,
+ "bottom": 441.8000030517578,
"height": 61.80000305175781,
- "left": 369.5,
- "right": 569.5,
- "top": 489.5,
+ "left": 287,
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+ "top": 380,
"width": 200,
- "x": 369.5,
- "y": 489.5
+ "x": 287,
+ "y": 380
},
"tool_id": null,
"tool_state": "{\"optional\": false}",
"tool_version": null,
"type": "data_input",
- "uuid": "636feac8-efd9-4068-aafa-8957c0fa86f7",
+ "uuid": "4190d319-5d77-462b-aca3-5613d0183bd2",
"workflow_outputs": [
{
"label": null,
"output_name": "output",
- "uuid": "541f7fb0-a26a-40dd-b8d0-c69af68602a1"
+ "uuid": "95c8b57d-96f4-4beb-b48f-102bd7e84e32"
}
]
},
@@ -127,32 +127,32 @@
"inputs": [
{
"description": "",
- "name": "blastx file org2"
+ "name": "blastp file org1"
}
],
- "label": "blastx file org2",
+ "label": "blastp file org1",
"name": "Input dataset",
"outputs": [],
"position": {
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+ "bottom": 200.8000030517578,
"height": 61.80000305175781,
- "left": 647.5,
- "right": 847.5,
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+ "left": -547,
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+ "top": 139,
"width": 200,
- "x": 647.5,
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"tool_state": "{\"optional\": false}",
"tool_version": null,
"type": "data_input",
- "uuid": "4190d319-5d77-462b-aca3-5613d0183bd2",
+ "uuid": "48fcc878-732f-45a7-8b50-cb9ad87069a7",
"workflow_outputs": [
{
"label": null,
"output_name": "output",
- "uuid": "1dd76f79-4b97-4657-8c03-869f922dd783"
+ "uuid": "f6e0871f-618e-4ccb-a99a-f2e2e89d6cdd"
}
]
},
@@ -172,14 +172,14 @@
"name": "Input dataset",
"outputs": [],
"position": {
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+ "bottom": 492.1999969482422,
"height": 82.19999694824219,
- "left": 925.5,
- "right": 1125.5,
- "top": 549.5,
+ "left": 565,
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+ "top": 410,
"width": 200,
- "x": 925.5,
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+ "x": 565,
+ "y": 410
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"tool_id": null,
"tool_state": "{\"optional\": false}",
@@ -190,7 +190,7 @@
{
"label": null,
"output_name": "output",
- "uuid": "aac2ca5e-376e-4c2e-bdae-7fe06328eec9"
+ "uuid": "7937fbb2-2985-4b44-9136-8858333af65c"
}
]
},
@@ -210,14 +210,14 @@
"name": "Input dataset",
"outputs": [],
"position": {
- "bottom": 661.6999969482422,
+ "bottom": 522.1999969482422,
"height": 82.19999694824219,
- "left": 1203.5,
- "right": 1403.5,
- "top": 579.5,
+ "left": 843,
+ "right": 1043,
+ "top": 440,
"width": 200,
- "x": 1203.5,
- "y": 579.5
+ "x": 843,
+ "y": 440
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"tool_id": null,
"tool_state": "{\"optional\": false}",
@@ -228,7 +228,7 @@
{
"label": null,
"output_name": "output",
- "uuid": "25c82e91-a732-4922-915c-d5a5200465f7"
+ "uuid": "63859b1c-1e2d-4f40-b09b-e10f1d9458f4"
}
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},
@@ -239,7 +239,7 @@
"id": 6,
"input_connections": {
"input": {
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+ "id": 3,
"output_name": "output"
}
},
@@ -270,14 +270,14 @@
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- "left": 91.5,
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+ "left": -269,
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@@ -287,15 +287,15 @@
"owner": "gga",
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- "uuid": "ed659d9e-a933-4192-bad0-1f3c4b5c2500"
+ "uuid": "7464a87e-a02d-4a4b-94ca-797fe4ac51ac"
}
]
},
@@ -1055,14 +1055,14 @@
}
],
"position": {
- "bottom": 568.1000061035156,
+ "bottom": 428.6000061035156,
"height": 113.60000610351562,
- "left": 3705.5,
- "right": 3905.5,
- "top": 454.5,
+ "left": 3345,
+ "right": 3545,
+ "top": 315,
"width": 200,
- "x": 3705.5,
- "y": 454.5
+ "x": 3345,
+ "y": 315
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/gga/tripal_db_index/db_index/3.2.1.1",
@@ -1073,19 +1073,19 @@
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"expose\": {\"do_expose\": \"no\", \"__current_case__\": 0}, \"queues\": \"10\", \"table\": {\"mode\": \"website\", \"__current_case__\": 0}, \"tokenizer\": \"standard\", \"wait_for\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
- "tool_version": null,
+ "tool_version": "3.2.1.1",
"type": "tool",
"uuid": "538a956c-92db-4c4c-b12e-e1a25edbf966",
"workflow_outputs": [
{
"label": "Index Tripal data",
"output_name": "results",
- "uuid": "f588d6a5-e3ac-4e77-9709-68e44be976c9"
+ "uuid": "a5466e32-6308-40ea-9249-9761f6b4da40"
}
]
}
},
"tags": [],
- "uuid": "f2ce81aa-ac7c-4043-80b2-ed5afd95f77b",
+ "uuid": "76723ac4-af67-4f90-8fa8-cff0969c402f",
"version": 2
}
\ No newline at end of file