diff --git a/constants_phaeo.py b/constants_phaeo.py index 0457cc2375fbe7bcdfece9e09e897f3d85f6e1e2..10cdb8c2136bde0874803052fed285b3e44f1747 100644 --- a/constants_phaeo.py +++ b/constants_phaeo.py @@ -40,9 +40,6 @@ WF_LOAD_GFF_JB_2_ORG_STEP_FEATURE_SYNC_ORG2 = "14" WF_LOAD_GFF_JB_2_ORG_STEP_POPULATE_VIEWS = "15" WF_LOAD_GFF_JB_2_ORG_STEP_INDEX = "16" -WORKFLOW_BLAST = "blast" -WORKFLOW_INTERPRO = "interpro" -WORKFLOW_VALID_TYPES = [WF_LOAD_GFF_JB, WORKFLOW_BLAST, WORKFLOW_INTERPRO] ### Galaxy tools diff --git a/gga_run_workflow_phaeo_jbrowse.py b/gga_run_workflow_phaeo_jbrowse.py index 500f2a73fca86b3f40d56597ad88902d4a95c3bf..89a0718d1cc94c07723729871b9db749e9ecbb79 100644 --- a/gga_run_workflow_phaeo_jbrowse.py +++ b/gga_run_workflow_phaeo_jbrowse.py @@ -347,10 +347,6 @@ if __name__ == "__main__": type=str, help="Where the stack containers will be located, defaults to working directory") - parser.add_argument("--workflow", "-w", - type=str, - help="Worfklow to run. Available options: load_fasta_gff_jbrowse, blast, interpro") - args = parser.parse_args() bioblend_logger = logging.getLogger("bioblend")