diff --git a/gga_load_data.py b/gga_load_data.py index 22fbd3533465e46786b80323a148aee16823c618..b77f1dacbd02428e9bb754202d10b4eed27eca44 100755 --- a/gga_load_data.py +++ b/gga_load_data.py @@ -141,7 +141,7 @@ class LoadData(speciesData.SpeciesData): for fname, files in folders.items(): if fname and files: - folder_name = fname[len(data_dir_root) + 1:] + folder_name = fname[len(CONTAINER_DATA_DIR_ROOT) + 1:] logging.info("Creating folder: %s" % folder_name) folder = self.create_deep_folder(prj_lib, folder_name) @@ -183,11 +183,9 @@ class LoadData(speciesData.SpeciesData): logging.info("Skipping useless file '%s'" % single_file) continue - single_file_path=os.path.join(CONTAINER_DATA_DIR_ROOT,single_file) - logging.info("Adding file '%s' with type '%s' and name '%s'" % (single_file, ftype, clean_name)) datasets = prj_lib.upload_from_galaxy_fs( - single_file_path, + single_file, folder=folder, link_data_only='link_to_files', file_type=ftype,