From 738f7df078beade59184c93cb65c201f63c54d00 Mon Sep 17 00:00:00 2001
From: alebars_sb <arthur.le-bars@sb-roscoff.fr>
Date: Thu, 29 Jul 2021 10:13:06 +0200
Subject: [PATCH] hda_id get error log
---
gga_run_workflow_phaeo_blast_interpro.py | 17 ++++++++---------
1 file changed, 8 insertions(+), 9 deletions(-)
diff --git a/gga_run_workflow_phaeo_blast_interpro.py b/gga_run_workflow_phaeo_blast_interpro.py
index 5861390..828dbc5 100644
--- a/gga_run_workflow_phaeo_blast_interpro.py
+++ b/gga_run_workflow_phaeo_blast_interpro.py
@@ -298,26 +298,25 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
blastp_ldda_id = ldda_id
elif ldda_name.endswith(self.blastx_filename):
blastx_ldda_id = ldda_id
-
+
hda_list = self.instance.datasets.get_datasets()
+ print(hda_list)
# Finding datasets in history (matching datasets names)
for hda in hda_list:
hda_name = hda["name"]
hda_id = hda["id"]
- if hda_name == self.genome_filename:
- genome_hda_id = hda_id
- if hda_name == self.gff_filename:
- gff_hda_id = hda_id
- if hda_name == self.transcripts_filename:
- transcripts_hda_id = hda_id
- if hda_name == self.proteins_filename :
- proteins_hda_id = hda_id
if hda_name == self.blastp_filename:
blastp_hda_id = hda_id
+ print("blastp_hda_name: %s" % hda_name)
+ print("blastp_hda_id: %s" % hda_id)
if hda_name == self.blastx_filename:
blastx_hda_id = hda_id
+ print("blastx_hda_name: %s" % hda_name)
+ print("blastx_hda_id: %s" % hda_id)
if hda_name == self.interpro_filename:
interproscan_hda_id = hda_id
+ print("interpro_hda_name: %s" % hda_name)
+ print("interpro_hda_id: %s" % hda_id)
# Import each dataset into history if it is not imported
logging.debug("Uploading datasets into history %s" % self.history_id)
--
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