From 7ca737a52722f78fb105e8f302768ed8551180dc Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Tue, 11 May 2021 20:59:28 +0200
Subject: [PATCH] fix filepath for upload_from_galaxy_fs()
---
gga_load_data.py | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gga_load_data.py b/gga_load_data.py
index b77f1da..484bec4 100755
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -183,9 +183,11 @@ class LoadData(speciesData.SpeciesData):
logging.info("Skipping useless file '%s'" % single_file)
continue
+ single_file_path=os.path.join(CONTAINER_DATA_DIR_ROOT,single_file)
+
logging.info("Adding file '%s' with type '%s' and name '%s'" % (single_file, ftype, clean_name))
datasets = prj_lib.upload_from_galaxy_fs(
- single_file,
+ single_file_path,
folder=folder,
link_data_only='link_to_files',
file_type=ftype,
--
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