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+++ b/README.md
@@ -99,11 +99,11 @@ before calling the other scripts**
 9) (*Optional*) TODO: Generate and update metadata files
 
 ## Usage:
-- Deploy stacks part: ```$ python3 /path/to/repo/deploy_stacks.py -i your_input_file.yml```
+- Deploy stacks part: ```$ python3 /path/to/repo/gga_init.py -i your_input_file.yml```
 
-- Copy source data file and load data into the galaxy container: ```$ python3 /path/to/repo/load_data.py -i your_input_file.yml```
+- Copy source data file and load data into the galaxy container: ```$ python3 /path/to/repo/gga_load_data.py -i your_input_file.yml```
 
-- Run a workflow: ```$ python3 /path/to/repo/run_workflow.py -i your_input_file.yml``` 
+- Run a workflow: ```$ python3 /path/to/repo/run_workflow_phaeoexplorer.py -i your_input_file.yml``` 
 
 **Warning: the input file have to be the same for the 3 steps!**