From 8957b500eb3df9a8cd11777d4a81ed37e799fce6 Mon Sep 17 00:00:00 2001 From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr> Date: Thu, 17 Sep 2020 15:51:03 +0200 Subject: [PATCH] Update README.md with new script name --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 144f85d..b423808 100755 --- a/README.md +++ b/README.md @@ -99,11 +99,11 @@ before calling the other scripts** 9) (*Optional*) TODO: Generate and update metadata files ## Usage: -- Deploy stacks part: ```$ python3 /path/to/repo/deploy_stacks.py -i your_input_file.yml``` +- Deploy stacks part: ```$ python3 /path/to/repo/gga_init.py -i your_input_file.yml``` -- Copy source data file and load data into the galaxy container: ```$ python3 /path/to/repo/load_data.py -i your_input_file.yml``` +- Copy source data file and load data into the galaxy container: ```$ python3 /path/to/repo/gga_load_data.py -i your_input_file.yml``` -- Run a workflow: ```$ python3 /path/to/repo/run_workflow.py -i your_input_file.yml``` +- Run a workflow: ```$ python3 /path/to/repo/run_workflow_phaeoexplorer.py -i your_input_file.yml``` **Warning: the input file have to be the same for the 3 steps!** -- GitLab