From 9aec58bff920f0c2461d322aaf7c974ad294473e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Loraine=20Gu=C3=A9guen?=
<loraine-gueguen@users.noreply.github.com>
Date: Mon, 22 Feb 2021 22:32:49 +0100
Subject: [PATCH] Always connect to galaxy with localhost as hostname
---
gga_load_data.py | 12 +++---------
1 file changed, 3 insertions(+), 9 deletions(-)
diff --git a/gga_load_data.py b/gga_load_data.py
index 9d96dc2..f0501c5 100644
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -375,15 +375,9 @@ if __name__ == "__main__":
# Parse the config yaml file
load_data_for_current_species.config = utilities.parse_config(args.config)
# Set the instance url attribute
- for env_variable, value in load_data_for_current_species.config.items():
- if env_variable == "hostname":
- load_data_for_current_species.instance_url = "http://{0}:8888/sp/{1}_{2}/galaxy/".format(
- value, load_data_for_current_species.genus_lowercase, load_data_for_current_species.species)
- break
- else:
- load_data_for_current_species.instance_url = "http://localhost:8888/sp/{0}_{1}/galaxy/".format(
- load_data_for_current_species.genus_lowercase,
- load_data_for_current_species.species)
+ load_data_for_current_species.instance_url = "http://localhost:8888/sp/{0}_{1}/galaxy/".format(
+ load_data_for_current_species.genus_lowercase,
+ load_data_for_current_species.species)
# Change serexec permissions in repo
try:
--
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