From 9db3bcffc04c7aa128ddfcba3b46fa04d71effe3 Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Tue, 11 May 2021 14:53:29 +0200
Subject: [PATCH] Added date in gff file
---
run_workflow_phaeoexplorer.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/run_workflow_phaeoexplorer.py b/run_workflow_phaeoexplorer.py
index b5f70f0..4b135ea 100755
--- a/run_workflow_phaeoexplorer.py
+++ b/run_workflow_phaeoexplorer.py
@@ -611,7 +611,6 @@ class RunWorkflow(speciesData.SpeciesData):
for e in v2:
if type(e) == dict:
if "transcripts" in e["name"]:
- # the attributes datasets is set in the function get_instance_attributes()
self.datasets["transcripts_file"] = e["ldda_id"]
self.datasets_name["transcripts_file"] = e["name"]
elif "proteins" in e["name"]:
@@ -637,7 +636,7 @@ class RunWorkflow(speciesData.SpeciesData):
dataset_id = dataset["id"]
if dataset_name == "{0}_v{1}.fasta".format(self.dataset_prefix, self.genome_version):
genome_hda_id = dataset_id
- if dataset_name == "{0}_OGS{1}.gff".format(self.dataset_prefix, self.ogs_version):
+ if dataset_name == "{0}_OGS{1}_{2}.gff".format(self.dataset_prefix, self.ogs_version, self.date):
gff_hda_id = dataset_id
if dataset_name == "{0}_OGS{1}_transcripts.fasta".format(self.dataset_prefix, self.ogs_version):
transcripts_hda_id = dataset_id
--
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