diff --git a/README.md b/README.md index 2d077bd2f1eac0e814e30ee1a337fab541f1a690..bd4d80ea9a49659d20cdb7bd0bc03d9bb58c3617 100755 --- a/README.md +++ b/README.md @@ -74,8 +74,8 @@ $ python3 /path/to/repo/gga_load_data.py input_file.yml -c/--config config_file - Run a workflow in galaxy: ```bash -$ python3 /path/to/repo/gga_load_data.py input_file.yml -c/--config config_file --workflow /path/to/workflow.ga [-v/--verbose] [OPTIONS] - --workflow $WORKFLOW (Path to the workflow to run in galaxy. A couple of preset workflows are available in the "workflows" folder of the repository) +$ python3 /path/to/repo/gga_load_data.py input_file.yml -c/--config config_file --workflow workflow_type [-v/--verbose] [OPTIONS] + --workflow (Valid options: "chado_load_fasta_gff_jbrowse", "blast", "intepro", a couple of preset workflows are available in the workflows_phaeoexplorer directory in this repository) --main-directory $PATH (Path where to access stacks; default=current directory) ```