From b43ae9d10f52ae90e5d9c1043ea88ac7bfabf4fc Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Fri, 19 Feb 2021 16:25:37 +0100
Subject: [PATCH] Update get_data and load_data scripts (+gga_preprocessing
update)
---
gga_get_data.py | 2 +-
gga_load_data.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/gga_get_data.py b/gga_get_data.py
index 4d56b30..07c1b04 100644
--- a/gga_get_data.py
+++ b/gga_get_data.py
@@ -184,4 +184,4 @@ if __name__ == "__main__":
# get_data_for_current_species.batch_modify_fasta_headers()
# logging.info("Successfully formatted files headers %s " % get_data_for_current_species.full_name)
- logging.info("Data successfully loaded and imported for %s" % get_data_for_current_species.full_name)
+ logging.info("Data successfully copied in src_data for %s" % get_data_for_current_species.full_name)
diff --git a/gga_load_data.py b/gga_load_data.py
index 17443e3..9d96dc2 100644
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -166,7 +166,7 @@ class LoadData(speciesData.SpeciesData):
ftype = 'auto'
clean_name = os.path.basename(single_file)
- clean_name = clean_name.replace('_', ' ')
+ clean_name = clean_name.replace('_', ' ') # Not a good idea for files with a complex name (solution --> rename file or remove the replace)
if single_file.endswith('.bam'):
ftype = 'bam'
--
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