From b732eed0ee173cee52590c007ad002a32be4f252 Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Tue, 4 May 2021 11:32:05 +0200
Subject: [PATCH] Add clean function in SpeciesData
---
speciesData.py | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/speciesData.py b/speciesData.py
index 00893cb..e92c3ad 100755
--- a/speciesData.py
+++ b/speciesData.py
@@ -25,11 +25,12 @@ class SpeciesData:
def __init__(self, parameters_dictionary):
# self.config_dictionary = None
self.parameters_dictionary = parameters_dictionary
- self.species = self.clean_string(str(parameters_dictionary["description"]["species"]))
- self.genus = self.clean_string(str(parameters_dictionary["description"]["genus"]))
- self.strain = self.clean_string(str(parameters_dictionary["description"]["strain"]))
- self.sex = self.clean_string(str(parameters_dictionary["description"]["sex"]))
- self.common = self.clean_string(str(parameters_dictionary["description"]["common_name"]))
+ parameters_dictionary_description=parameters_dictionary["description"]
+ self.species = self.clean_string(parameters_dictionary_description["species"])
+ self.genus = self.clean_string(parameters_dictionary_description["genus"])
+ self.strain = self.clean_string(parameters_dictionary_description["strain"])
+ self.sex = self.clean_string(parameters_dictionary_description["sex"])
+ self.common = self.clean_string(parameters_dictionary_description["common_name"])
self.date = datetime.today().strftime("%Y-%m-%d")
self.origin = parameters_dictionary["description"]["origin"]
--
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