diff --git a/README.md b/README.md
index c11b3c72699c61d2b9663ac39b11f6903e1144c6..b2647ccccc0494e3b724f6f60264365935adc473 100755
--- a/README.md
+++ b/README.md
@@ -3,10 +3,11 @@
 The gga_load_data tools allow automated deployment of GMOD visualisation tools (Chado, Tripal, JBrowse, Galaxy) for a bunch of genomes and datasets. 
 They are based on the [Galaxy Genome Annotation (GGA) project](https://galaxy-genome-annotation.github.io). 
 
-A stack of Docker services is deployed for each organism, from an input yaml file describing the data.
+A stack of Docker services is deployed for each species, from an input yaml file describing the data.
 See `examples/example.yml` for an example of what information can be described and the correct formatting of this input file.
 
-Each GGA environment is deployed at [https://hostname/sp/genus_species/](https://hostname/sp/genus_species/).
+A GGA environment is deployed for each different species at [https://hostname/sp/genus_species/](https://hostname/sp/genus_species/).
+Multiple strains can have the same species and are deployed in the same GGA environment.
 
 ## Requirements
 
diff --git a/examples/citrus_sinensis.yml b/examples/citrus_sinensis.yml
index 0ff6d02d63aa08d80bb9f0bc713c4005c1494876..63483e4e70dde45425a68185cf51ef18587ef403 100644
--- a/examples/citrus_sinensis.yml
+++ b/examples/citrus_sinensis.yml
@@ -12,6 +12,8 @@
     strain:
     common_name:
     origin:
+    # Useful when there are multiple strains for the same species: set to "yes" to define the strain used as home for JBrowse
+    # main_species: yes
   data:
   # Paths to the different datasets to copy and import into the galaxy container (as a shared library)
   # Must be absolute paths to the dataset
diff --git a/examples/config.yml b/examples/config.yml
index c1d5d28db7866d3a9e90fa2606d1f9aa30cf99f3..cb0873228743b5412908e149901882407f709000 100644
--- a/examples/config.yml
+++ b/examples/config.yml
@@ -8,7 +8,7 @@ proxy_ip: XXX.XXX.XXX.XXX  # Required. IP of the upstream proxy (used by Traefik
 authentication_domain_name: XXXXXXXX  #  Required for Authelia. The authentication domain name.
 authelia_config_path: /path/to/authelia_config.yml #  Required for Authelia. Path to the Authelia configuration file
 authelia_secrets_env_path: /path/to/authelia/secrets.env #  Required for Authelia. Path to the env file containing passwords and secrets needed for Authelia
-authelia-db_postgres_password: XXXXXXXX #  Required for Authelia.
+authelia_db_postgres_password: XXXXXXXX #  Required for Authelia.
 
 # galaxy-specific variables
 galaxy_default_admin_email: gga@galaxy.org  # Required
diff --git a/templates/traefik_compose.yml.j2 b/templates/traefik_compose.yml.j2
index c72595e3a269d5976e02ec3d60a8fda8635f45e9..0b4634f62a801a354a9c4e9567c22b7220928c32 100644
--- a/templates/traefik_compose.yml.j2
+++ b/templates/traefik_compose.yml.j2
@@ -86,7 +86,7 @@ services:
       - ./authelia/:/etc/authelia/:ro
     {% if authelia_secrets_env_path is defined %}
     env_file:
-      - ./authelia/secrets.env
+      - {{authelia_secrets_env_path}}
     {% endif %}
     deploy:
       labels: