From c8c3ba3ef234ce0c4753de932cf92b6cb6a1689b Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Sun, 16 May 2021 14:13:55 +0200
Subject: [PATCH] Add debug
---
gga_init.py | 2 +-
utilities.py | 1 +
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/gga_init.py b/gga_init.py
index 4e30e0f..74c1d85 100755
--- a/gga_init.py
+++ b/gga_init.py
@@ -134,7 +134,7 @@ class DeploySpeciesStack(speciesData.SpeciesData):
galaxy_nginx_conf_file.truncate(0)
galaxy_nginx_conf_file.write(galaxy_nginx_conf_output)
else:
- logging.debug("galaxy_nginx.conf alredy exists")
+ logging.debug("galaxy_nginx.conf already exists")
# Create the volumes (directory) of the species docker-compose file
create_mounts(working_dir=".", main_dir=self.main_dir)
diff --git a/utilities.py b/utilities.py
index 808e33e..3e23ef4 100755
--- a/utilities.py
+++ b/utilities.py
@@ -37,6 +37,7 @@ def parse_config(config_file):
config_dict = load_yaml(config_file)
if isinstance(config_dict, dict):
+ logging.debug("Config dictionary: {0}".format(config_dict))
return config_dict
else:
logging.critical("Config yaml file is not a dictionary" % config_file)
--
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