From c8ebcf2abb72dc76195dc2f8851de9fcb41e24be Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Tue, 23 Mar 2021 12:04:08 +0100
Subject: [PATCH] regex protein capture in chado load gff
---
workflows/Chado_load_Tripal_synchronize.ga | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflows/Chado_load_Tripal_synchronize.ga b/workflows/Chado_load_Tripal_synchronize.ga
index 59c2241..9b25057 100644
--- a/workflows/Chado_load_Tripal_synchronize.ga
+++ b/workflows/Chado_load_Tripal_synchronize.ga
@@ -230,7 +230,7 @@
"owner": "gga",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
- "tool_state": "{\"add_only\": \"false\", \"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"fasta\": {\"__class__\": \"RuntimeValue\"}, \"gff\": {\"__class__\": \"RuntimeValue\"}, \"landmark_type\": \"contig\", \"no_seq_compute\": \"false\", \"organism\": {\"__class__\": \"RuntimeValue\"}, \"prot_naming\": {\"method\": \"regex\", \"__current_case__\": 1, \"re_protein_capture\": \"prot\\\\1\", \"re_protein\": \"protein\\\\1\"}, \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+ "tool_state": "{\"add_only\": \"false\", \"analysis_id\": {\"__class__\": \"RuntimeValue\"}, \"fasta\": {\"__class__\": \"RuntimeValue\"}, \"gff\": {\"__class__\": \"RuntimeValue\"}, \"landmark_type\": \"contig\", \"no_seq_compute\": \"false\", \"organism\": {\"__class__\": \"RuntimeValue\"}, \"prot_naming\": {\"method\": \"regex\", \"__current_case__\": 1, \"re_protein_capture\": \"^mRNA(\\\\..+)$\", \"re_protein\": \"prot\\\\1\"}, \"psql_target\": {\"method\": \"remote\", \"__current_case__\": 0}, \"wait_for\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.3.3",
"type": "tool",
"uuid": "b100a055-0dab-4f2f-8c46-573713ed3fff",
--
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