From d7ca5b07d9753969ba146ed2a15f694961a00810 Mon Sep 17 00:00:00 2001
From: alebars_sb <arthur.le-bars@sb-roscoff.fr>
Date: Thu, 29 Jul 2021 10:24:05 +0200
Subject: [PATCH] hda_id get error log
---
gga_run_workflow_phaeo_blast_interpro.py | 10 ++++++++--
1 file changed, 8 insertions(+), 2 deletions(-)
diff --git a/gga_run_workflow_phaeo_blast_interpro.py b/gga_run_workflow_phaeo_blast_interpro.py
index 828dbc5..3983d4e 100644
--- a/gga_run_workflow_phaeo_blast_interpro.py
+++ b/gga_run_workflow_phaeo_blast_interpro.py
@@ -38,7 +38,11 @@ class OrgWorkflowParamBlastInterproscan(gga_run_workflow_phaeo.OrgWorkflowParam)
self.history_id,
self.instance,
self.blastp_analysis_id,
- self.blastp_hda_id]
+ self.blastp_hda_id,
+ self.blastx_analysis_id,
+ self.blastx_hda_id,
+ self.interpro_analysis_id,
+ self.interproscan_hda_id]
utilities_bioblend.check_wf_param(self.full_name, params)
@@ -300,7 +304,6 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
blastx_ldda_id = ldda_id
hda_list = self.instance.datasets.get_datasets()
- print(hda_list)
# Finding datasets in history (matching datasets names)
for hda in hda_list:
hda_name = hda["name"]
@@ -344,8 +347,11 @@ class RunWorkflowBlastInterpro(gga_run_workflow_phaeo.RunWorkflow):
logging.debug("blastp file not found in library (exit code: {0})".format(exc))
self.blastp_hda_id = blastp_hda_id
+ print(self.blastp_hda_id)
self.blastx_hda_id = blastx_hda_id
+ print(self.blastx_hda_id)
self.interproscan_hda_id = interproscan_hda_id
+ print(self.interproscan_hda_id)
def prepare_history_and_get_wf_param(sp_dict_list, main_dir, config):
--
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