From dbd5d298aeb861451b4901f2ad86ee524469d65e Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Tue, 4 May 2021 15:49:00 +0200
Subject: [PATCH] removed obsolete code
---
gga_load_data.py | 31 -------------------------------
1 file changed, 31 deletions(-)
diff --git a/gga_load_data.py b/gga_load_data.py
index cf506c1..cc73e3e 100755
--- a/gga_load_data.py
+++ b/gga_load_data.py
@@ -87,37 +87,6 @@ class LoadData(speciesData.SpeciesData):
get_organism_tool_version = get_organism_tool["version"]
delete_organism_tool_version = delete_organism_tool["version"]
- # if delete_organism_tool["version"] != "2.3.4+galaxy0":
- # toolshed_dict = delete_organism_tool["tool_shed_repository"]
- # logging.warning("Changeset for %s is not installed" % toolshed_dict["name"])
- # changeset_revision = "b1aa4f9d82fe"
- # name = toolshed_dict["name"]
- # owner = toolshed_dict["owner"]
- # toolshed = "https://" + toolshed_dict["tool_shed"]
- # logging.warning("Installing changeset for %s" % toolshed_dict["name"])
-
- # self.instance.toolshed.install_repository_revision(tool_shed_url=toolshed, name=name, owner=owner,
- # changeset_revision=changeset_revision,
- # install_tool_dependencies=True,
- # install_repository_dependencies=False,
- # install_resolver_dependencies=True)
-
-
- # if get_organism_tool["version"] != "2.3.4+galaxy0":
- # toolshed_dict = get_organism_tool["tool_shed_repository"]
- # logging.warning("Changeset for %s is not installed" % toolshed_dict["name"])
- # changeset_revision = "831229e6cda2"
- # name = toolshed_dict["name"]
- # owner = toolshed_dict["owner"]
- # toolshed = "https://" + toolshed_dict["tool_shed"]
- # logging.warning("Installing changeset for %s" % toolshed_dict["name"])
-
- # self.instance.toolshed.install_repository_revision(tool_shed_url=toolshed, name=name, owner=owner,
- # changeset_revision=changeset_revision,
- # install_tool_dependencies=True,
- # install_repository_dependencies=False,
- # install_resolver_dependencies=True)
-
logging.debug("Getting 'Homo sapiens' ID in instance's chado database")
get_sapiens_id_job = self.instance.tools.run_tool(
tool_id="toolshed.g2.bx.psu.edu/repos/gga/chado_organism_get_organisms/organism_get_organisms/%s" % get_organism_tool_version,
--
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