From e1d81753b9cf3aec4c913a234b655829fd8cec7a Mon Sep 17 00:00:00 2001
From: Loraine Gueguen <loraine.gueguen@sb-roscoff.fr>
Date: Sun, 30 May 2021 20:52:42 +0200
Subject: [PATCH] fix jbrowse_links separator
---
utilities.py | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/utilities.py b/utilities.py
index 13d7d73..340a987 100755
--- a/utilities.py
+++ b/utilities.py
@@ -194,10 +194,11 @@ def get_sp_jbrowse_links(org_list):
for org in org_list:
gspecies = org.genus_species
- if gspecies not in jbrowse_links_dict.keys():
- jbrowse_links_dict[gspecies] = ""
if org.contig_prefix != "":
- jbrowse_links_dict[gspecies] = jbrowse_links_dict[gspecies] + ";" + org.contig_prefix + ">" + org.species_folder_name
+ if gspecies not in jbrowse_links_dict.keys():
+ jbrowse_links_dict[gspecies] = org.contig_prefix + ">" + org.species_folder_name
+ else:
+ jbrowse_links_dict[gspecies] = jbrowse_links_dict[gspecies] + ";" + org.contig_prefix + ">" + org.species_folder_name
return jbrowse_links_dict
--
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