diff --git a/gga_init.py b/gga_init.py index f8c705e2f27530c0a6f7b940b08cc97ad5b60b1a..cc2cbdd6c4302eaa907301659a45d21caa9c8321 100755 --- a/gga_init.py +++ b/gga_init.py @@ -341,6 +341,7 @@ def deploy_stacks(input_list, main_dir, deploy_traefik): logging.info("Updating traefik stack") run_docker_stack_deploy("traefik", traefik_dir) + #TODO: add test to check that the network/name resolution is fine in each galaxy container if __name__ == "__main__": parser = argparse.ArgumentParser(description="Deploy GGA containers") diff --git a/gga_run_workflow_phaeo_jbrowse.py b/gga_run_workflow_phaeo_jbrowse.py index 8d22c2233ccd6ccb5f768fa3b7a3a874b805326b..69f5f46efe0c93bdfe7c8da3da1429153f36f3dd 100644 --- a/gga_run_workflow_phaeo_jbrowse.py +++ b/gga_run_workflow_phaeo_jbrowse.py @@ -388,6 +388,8 @@ if __name__ == "__main__": main_dir=main_dir, config=config) + # TODO: store wf param of all strains from the same species and run wf, don't wait for all org + for genus_species, strains in all_org_wf_param_dict.items(): strains_list = list(strains.keys()) strains_count = len(strains_list)