diff --git a/gga_init.py b/gga_init.py index f8c705e2f27530c0a6f7b940b08cc97ad5b60b1a..92bee9eab47905620c7ef607e325f22a50679649 100755 --- a/gga_init.py +++ b/gga_init.py @@ -431,9 +431,9 @@ if __name__ == "__main__": deploy_stack_for_current_organism.make_compose_files() logging.info("Successfully generated the docker-compose files for %s %s", deploy_stack_for_current_organism.genus, deploy_stack_for_current_organism.species) - logging.info("Deploying stacks") - if args.force_traefik: - deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=True) - else: - deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=False) - logging.info("All stacks deployed for organisms in input file %s" % args.input) + # logging.info("Deploying stacks") + # if args.force_traefik: + # deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=True) + # else: + # deploy_stacks(input_list=sp_dict_list, main_dir=main_dir, deploy_traefik=False) + # logging.info("All stacks deployed for organisms in input file %s" % args.input) diff --git a/utilities.py b/utilities.py index b928b4c067617b785ba4da70ff9a58fd101a403e..0bad62244d2095d93ea4e0c41e525a7629dbe674 100755 --- a/utilities.py +++ b/utilities.py @@ -164,6 +164,8 @@ def get_sp_picture(sp_dict_list): sp_picture_dict[genus_species] = sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH] + logging.debug("picture dict: %s" % sp_picture_dict) + return sp_picture_dict def get_sp_jbrowse_links(org_list):