diff --git a/run_workflow_phaeoexplorer.py b/run_workflow_phaeoexplorer.py index acd5f890c52a65098e6a2e306d552cddb5c20ecc..7f273a6b50094bdcd79a9fbd0c8deec8c60b25d6 100755 --- a/run_workflow_phaeoexplorer.py +++ b/run_workflow_phaeoexplorer.py @@ -987,7 +987,7 @@ if __name__ == "__main__": logging.info("Input organism %s: 2 species detected in input dictionary" % k) # Set workflow path (2 organisms) - workflow_path = os.path.join(os.path.abspath(script_dir), "workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v3.ga") + workflow_path = os.path.join(os.path.abspath(script_dir), "workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v2.ga") # Instance object required variables instance_url, email, password = None, None, None @@ -1084,7 +1084,6 @@ if __name__ == "__main__": # Look for empty parameters values, throw a critical error if a parameter value is invalid for param_name, param_value in org2_parameters_dict.items(): - logging.info("Parameters for organism 1 (%s)" % org2_full_name) if param_value is None or param_value == "": logging.critical("Empty parameter found for organism {0} (parameter: {1}, parameter value: {2})".format(org2_full_name, param_name, param_value)) sys.exit()