From f3644d248fd2579f900972f7380c8e06005a2c2d Mon Sep 17 00:00:00 2001
From: Arthur Le Bars <arthur.le-bars@sb-roscoff.fr>
Date: Tue, 4 May 2021 17:13:06 +0200
Subject: [PATCH] rollback workflow version
---
run_workflow_phaeoexplorer.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/run_workflow_phaeoexplorer.py b/run_workflow_phaeoexplorer.py
index acd5f89..7f273a6 100755
--- a/run_workflow_phaeoexplorer.py
+++ b/run_workflow_phaeoexplorer.py
@@ -987,7 +987,7 @@ if __name__ == "__main__":
logging.info("Input organism %s: 2 species detected in input dictionary" % k)
# Set workflow path (2 organisms)
- workflow_path = os.path.join(os.path.abspath(script_dir), "workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v3.ga")
+ workflow_path = os.path.join(os.path.abspath(script_dir), "workflows_phaeoexplorer/Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v2.ga")
# Instance object required variables
instance_url, email, password = None, None, None
@@ -1084,7 +1084,6 @@ if __name__ == "__main__":
# Look for empty parameters values, throw a critical error if a parameter value is invalid
for param_name, param_value in org2_parameters_dict.items():
- logging.info("Parameters for organism 1 (%s)" % org2_full_name)
if param_value is None or param_value == "":
logging.critical("Empty parameter found for organism {0} (parameter: {1}, parameter value: {2})".format(org2_full_name, param_name, param_value))
sys.exit()
--
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