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Sync in wf

Merged Sync in wf
sync_in_wf into dev
Merged Loraine Gueguen requested to merge sync_in_wf into dev
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constants_phaeo.py
+ 26
− 17
@@ -8,7 +8,7 @@ import constants
WORKFLOWS_PATH = "workflows_phaeoexplorer/"
WF_LOAD_GFF_JB_1_ORG_FILE = "Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_1org_v6.ga"
WF_LOAD_GFF_JB_1_ORG_FILE = "Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_1org_v7.ga"
WF_LOAD_GFF_JB_1_ORG_INPUT_GENOME = "0"
WF_LOAD_GFF_JB_1_ORG_INPUT_GFF = "1"
WF_LOAD_GFF_JB_1_ORG_INPUT_PROTEINS = "2"
@@ -16,28 +16,37 @@ WF_LOAD_GFF_JB_1_ORG_STEP_LOAD_FASTA = "3"
WF_LOAD_GFF_JB_1_ORG_STEP_JBROWSE = "4"
WF_LOAD_GFF_JB_1_ORG_STEP_LOAD_GFF = "5"
WF_LOAD_GFF_JB_1_ORG_STEP_JB_TO_CONTAINER = "6"
WF_LOAD_GFF_JB_1_ORG_STEP_FEATURE_SYNC = "7"
WF_LOAD_GFF_JB_1_ORG_STEP_POPULATE_VIEWS = "8"
WF_LOAD_GFF_JB_1_ORG_STEP_INDEX = "9"
WF_LOAD_GFF_JB_1_ORG_STEP_SYNC_FEATURE = "7"
WF_LOAD_GFF_JB_1_ORG_STEP_SYNC_ORG = "8"
WF_LOAD_GFF_JB_1_ORG_STEP_SYNC_GENOME_ANALYSIS = "9"
WF_LOAD_GFF_JB_1_ORG_STEP_SYNC_OGS_ANALYSIS = "10"
WF_LOAD_GFF_JB_1_ORG_STEP_POPULATE_VIEWS = "11"
WF_LOAD_GFF_JB_1_ORG_STEP_INDEX = "12"
WF_LOAD_GFF_JB_2_ORG_FILE = "Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v6.ga"
WF_LOAD_GFF_JB_2_ORG_INPUT_GENOME_ORG1 = "0"
WF_LOAD_GFF_JB_2_ORG_INPUT_GFF_ORG1 = "1"
WF_LOAD_GFF_JB_2_ORG_INPUT_PROTEINS_ORG1 = "2"
WF_LOAD_GFF_JB_2_ORG_INPUT_GENOME_ORG2 = "3"
WF_LOAD_GFF_JB_2_ORG_INPUT_GFF_ORG2 = "4"
WF_LOAD_GFF_JB_2_ORG_FILE = "Galaxy-Workflow-chado_load_tripal_synchronize_jbrowse_2org_v7.ga"
WF_LOAD_GFF_JB_2_ORG_INPUT_GENOME_ORG1 = "4"
WF_LOAD_GFF_JB_2_ORG_INPUT_GFF_ORG1 = "2"
WF_LOAD_GFF_JB_2_ORG_INPUT_PROTEINS_ORG1 = "0"
WF_LOAD_GFF_JB_2_ORG_INPUT_GENOME_ORG2 = "1"
WF_LOAD_GFF_JB_2_ORG_INPUT_GFF_ORG2 = "3"
WF_LOAD_GFF_JB_2_ORG_INPUT_PROTEINS_ORG2 = "5"
WF_LOAD_GFF_JB_2_ORG_STEP_LOAD_FASTA_ORG1 = "6"
WF_LOAD_GFF_JB_2_ORG_STEP_JBROWSE_ORG1 = "7"
WF_LOAD_GFF_JB_2_ORG_STEP_JRBOWSE_ORG2 = "8"
WF_LOAD_GFF_JB_2_ORG_STEP_LOAD_FASTA_ORG1 = "7"
WF_LOAD_GFF_JB_2_ORG_STEP_JBROWSE_ORG1 = "8"
WF_LOAD_GFF_JB_2_ORG_STEP_JBROWSE_ORG2 = "6"
WF_LOAD_GFF_JB_2_ORG_STEP_LOAD_GFF_ORG1 = "9"
WF_LOAD_GFF_JB_2_ORG_STEP_JB_TO_CONTAINER = "10"
WF_LOAD_GFF_JB_2_ORG_STEP_FEATURE_SYNC_ORG1 = "11"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_FEATURE_ORG1 = "11"
WF_LOAD_GFF_JB_2_ORG_STEP_LOAD_FASTA_ORG2 = "12"
WF_LOAD_GFF_JB_2_ORG_STEP_LOAD_GFF_ORG2 = "13"
WF_LOAD_GFF_JB_2_ORG_STEP_FEATURE_SYNC_ORG2 = "14"
WF_LOAD_GFF_JB_2_ORG_STEP_POPULATE_VIEWS = "15"
WF_LOAD_GFF_JB_2_ORG_STEP_INDEX = "16"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_FEATURE_ORG2 = "14"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_ORG1 = "15"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_ORG2 = "16"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_GENOME_ANALYSIS_ORG1 = "17"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_OGS_ANALYSIS_ORG1 = "18"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_GENOME_ANALYSIS_ORG2 = "19"
WF_LOAD_GFF_JB_2_ORG_STEP_SYNC_OGS_ANALYSIS_ORG2 = "20"
WF_LOAD_GFF_JB_2_ORG_STEP_POPULATE_VIEWS = "21"
WF_LOAD_GFF_JB_2_ORG_STEP_INDEX = "22"
### Galaxy tools