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Sync in wf

Merged Loraine Gueguen requested to merge sync_in_wf into dev
+ 7
4
@@ -144,23 +144,26 @@ def get_sp_picture(sp_dict_list):
for sp in sp_dict_list:
genus_species = get_gspecies_string_from_sp_dict(sp)
logging.debug("picture path for {0} {1}: {2}".format(genus_species,
sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_STRAIN],
sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH]))
# no picture stored yet for this genus_species
if genus_species not in sp_picture_dict.keys() \
or (genus_species in sp_picture_dict.keys()
and sp_picture_dict[genus_species] == ""):
and sp_picture_dict[genus_species] == None):
if constants.ORG_PARAM_DESC_PICTURE_PATH in sp[constants.ORG_PARAM_DESC].keys() and \
sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH] != "":
sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH] != None:
sp_picture_dict[genus_species] = sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH]
else:
sp_picture_dict[genus_species] = ""
sp_picture_dict[genus_species] = None
# overwrite stored picture if a picture exists for the main strain
if (constants.ORG_PARAM_DESC_MAIN_SPECIES in sp[constants.ORG_PARAM_DESC].keys()
and sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_MAIN_SPECIES] == True )\
and (constants.ORG_PARAM_DESC_PICTURE_PATH in sp[constants.ORG_PARAM_DESC].keys()
and sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH] != ""):
and sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH] != None):
sp_picture_dict[genus_species] = sp[constants.ORG_PARAM_DESC][constants.ORG_PARAM_DESC_PICTURE_PATH]
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