release 1.0.1

• copy nginx conf from file or template
• define required param in config_example.yml
• fix species folder name (remove -)
• fix mount of unused galaxy_data_libs.py in docker-compose file

templates/traefik.yml

-version: '3.7'
-services:
-  traefik:
-    image: traefik:2.1.6
-    command:
-      - "--api"
-      - "--api.dashboard"
-#      - "--api.insecure=true" # added by lg to debug, for dashboard
-      - "--log.level=DEBUG"
-      - "--providers.docker"
-      - "--providers.docker.swarmMode=true"
-      - "--providers.docker.network=traefikbig" # changed by lg from traefik to traefikbig
-      - "--entryPoints.web.address=:80"
-      - "--entryPoints.web.forwardedHeaders.trustedIPs=192.168.1.133"  # The ips of our upstream proxies: eci
-      - "--entryPoints.webs.address=:443"
-      - "--entryPoints.webs.forwardedHeaders.trustedIPs=192.168.1.133"  # The ips of our upstream proxies: eci
-    ports:
-      - 8001:8080 # added by lg to debug, for dashboard
-      - 8888:80
-      - 8889:443
-    networks:
-      - traefikbig
-    volumes:
-      - /var/run/docker.sock:/var/run/docker.sock
-    deploy:
-      placement:
-        constraints:
-          - node.role == manager
-      labels:
-#        - "traefik.http.routers.traefik-api.rule=PathPrefix(`/traefik`)"
-        - "traefik.http.routers.traefik-api.rule=PathPrefix(`/api`) || PathPrefix(`/dashboard`) || PathPrefix(`/traefik`)" # lg
-#        - "traefik.http.routers.traefik-api.tls=true"
-        - "traefik.http.routers.traefik-api.entryPoints=web" # lg
-#        - "traefik.http.routers.traefik-api.entryPoints=webs"
-        - "traefik.http.routers.traefik-api.service=api@internal"
-        - "traefik.http.middlewares.traefik-strip.stripprefix.prefixes=/traefik"
-        - "traefik.http.middlewares.traefik-auth.forwardauth.address=http://authelia:9091/api/verify?rd=https://auth.abims-gga.sb-roscoff.fr/"
-        - "traefik.http.middlewares.traefik-auth.forwardauth.trustForwardHeader=true"
-#        - "traefik.http.routers.traefik-api.middlewares=traefik-auth,traefik-strip"
-        - "traefik.http.routers.traefik-api.middlewares=traefik-strip" # lg
-        # Dummy service for Swarm port detection. The port can be any valid integer value.
-        - "traefik.http.services.traefik-svc.loadbalancer.server.port=9999"
-        # Some generally useful middlewares for organisms hosting
-        - "traefik.http.middlewares.sp-auth.forwardauth.address=http://authelia:9091/api/verify?rd=https://auth.abims-gga.sb-roscoff.fr/"
-        - "traefik.http.middlewares.sp-auth.forwardauth.trustForwardHeader=true"
-        - "traefik.http.middlewares.sp-auth.forwardauth.authResponseHeaders=Remote-User,Remote-Groups"
-#        - "traefik.http.middlewares.sp-trailslash.redirectregex.regex=^(https?://[^/]+/sp/[^/]+)$$"
-        - "traefik.http.middlewares.sp-trailslash.redirectregex.regex=^(http?://[^/]+/sp/[^/]+)$$" # lg
-        - "traefik.http.middlewares.sp-trailslash.redirectregex.replacement=$${1}/"
-        - "traefik.http.middlewares.sp-trailslash.redirectregex.permanent=true"
-#        - "traefik.http.middlewares.sp-app-trailslash.redirectregex.regex=^(https?://[^/]+/sp/[^/]+/[^/]+)$$"
-        - "traefik.http.middlewares.sp-app-trailslash.redirectregex.regex=^(http?://[^/]+/sp/[^/]+/[^/]+)$$" # lg
-        - "traefik.http.middlewares.sp-app-trailslash.redirectregex.replacement=$${1}/"
-        - "traefik.http.middlewares.sp-app-trailslash.redirectregex.permanent=true"
-        - "traefik.http.middlewares.sp-prefix.stripprefixregex.regex=/sp/[^/]+"
-        - "traefik.http.middlewares.sp-app-prefix.stripprefixregex.regex=/sp/[^/]+/[^/]+"
-        - "traefik.http.middlewares.tripal-addprefix.addprefix.prefix=/tripal"
-        - "traefik.http.middlewares.sp-big-req.buffering.maxRequestBodyBytes=50000000"
-        - "traefik.http.middlewares.sp-huge-req.buffering.maxRequestBodyBytes=2000000000"
-      restart_policy:
-        condition: on-failure
-        delay: 5s
-        max_attempts: 3
-        window: 120s
-
-  authelia:
-    image: authelia/authelia:4.12.0
-    networks:
-      - traefikbig
-    depends_on:
-        - authelia-redis
-        - authelia-db
-    volumes:
-      - ./authelia/:/etc/authelia/:ro
-    deploy:
-      labels:
-        - "traefik.http.routers.authelia.rule=Host(`auth.example.org`)"
-        - "traefik.http.services.authelia.loadbalancer.server.port=9091"
-      restart_policy:
-        condition: on-failure
-        delay: 5s
-        max_attempts: 3
-        window: 120s
-
-  authelia-redis:
-    image: redis:5.0.7-alpine
-    command: ["redis-server", "--appendonly", "yes"]
-    volumes:
-      - ./authelia-redis/:/data/
-    networks:
-      - traefikbig
-    deploy:
-      restart_policy:
-        condition: on-failure
-        delay: 5s
-        max_attempts: 3
-        window: 120s
-
-  authelia-db:
-      image: postgres:12.2-alpine
-      environment:
-          POSTGRES_PASSWORD: z3A,hQ-9
-      volumes:
-          - ./docker_data/authelia_db/:/var/lib/postgresql/data/
-      networks:
-          - traefikbig
-      deploy:
-        restart_policy:
-          condition: on-failure
-          delay: 5s
-          max_attempts: 3
-          window: 120s
-
-networks:
-  traefikbig:
-    driver: overlay
-    name: traefikbig
-    ipam:
-      config:
-        - subnet: 10.50.0.0/16