# Constants used in the input yaml
ORG_PARAM_NAME = "name"
ORG_PARAM_DESC = "description"
ORG_PARAM_DESC_GENUS = "genus"
ORG_PARAM_DESC_SPECIES = "species"
ORG_PARAM_DESC_SEX = "sex"
ORG_PARAM_DESC_STRAIN = "strain"
ORG_PARAM_DESC_COMMON_NAME = "common_name"
ORG_PARAM_DESC_ORIGIN = "origin"
ORG_PARAM_DESC_PICTURE_PATH = "picture_path"
ORG_PARAM_DESC_MAIN_SPECIES = "main_species"
ORG_PARAM_DATA = "data"
ORG_PARAM_DATA_GENOME_PATH = "genome_path"
ORG_PARAM_DATA_TRANSCRIPTS_PATH = "transcripts_path"
ORG_PARAM_DATA_PROTEINS_PATH = "proteins_path"
ORG_PARAM_DATA_GFF_PATH = "gff_path"
ORG_PARAM_DATA_INTERPRO_PATH = "interpro_path"
ORG_PARAM_DATA_ORTHOFINDER_PATH = "orthofinder_path"
ORG_PARAM_DATA_BLASTP_PATH = "blastp_path"
ORG_PARAM_DATA_BLASTX_PATH = "blastx_path"
ORG_PARAM_DATA_GENOME_VERSION = "genome_version"
ORG_PARAM_DATA_OGS_VERSION = "ogs_version"
ORG_PARAM_DATA_PERFORMED_BY = "performed_by"
ORG_PARAM_SERVICES = "services"
ORG_PARAM_SERVICES_BLAST = "blast"


# Constants used in the config yaml file
CONF_ALL_HOSTNAME = "hostname"
CONF_ALL_HTTP_PORT = "http_port"
CONF_ALL_HTTPS_PORT = "https_port"
CONF_ALL_PROXY_IP = "proxy_ip"
CONF_ALL_AUTH_DOMAIN_NAME = "authentication_domain_name"
CONF_ALL_AUTHELIA_CONFIG_PATH = "authelia_config_path"
CONF_ALL_AUTHELIA_SECRETS_ENV_PATH = "authelia_secrets_env_path"
CONF_ALL_AUTHELIA_DB_POSTGRES_PASSWORD = "authelia_db_postgres_password"
CONF_GALAXY_DEFAULT_ADMIN_EMAIL = "galaxy_default_admin_email"
CONF_GALAXY_DEFAULT_ADMIN_USER = "galaxy_defaut_admin_user"
CONF_GALAXY_DEFAULT_ADMIN_PASSWORD = "galaxy_default_admin_password"
CONF_GALAXY_CONFIG_REMOTE_USER_MAILDOMAIN = "galaxy_config_remote_user_maildomain"
CONF_GALAXY_PERSIST_DATA = "galaxy_persist_data"
CONF_TRIPAL_PASSWORD = "tripal_password"
CONF_TRIPAL_BANNER_PATH = "tripal_banner_path"
CONF_TRIPAL_THEME_NAME = "tripal_theme_name"
CONF_TRIPAL_THEME_GIT_CLONE = "tripal_theme_git_clone"
CONF_JBROWSE_MENU_URL = "jbrowse_menu_url"

# default config file
DEFAULT_CONFIG = "examples/config"

GET_ORGANISMS_TOOL = "toolshed.g2.bx.psu.edu/repos/gga/chado_organism_get_organisms/organism_get_organisms/2.3.4+galaxy0"
DELETE_ORGANISMS_TOOL = "toolshed.g2.bx.psu.edu/repos/gga/chado_organism_delete_organisms/organism_delete_organisms/2.3.4+galaxy0"

HOST_DATA_DIR='src_data'
CONTAINER_DATA_DIR_ROOT='/project_data'