# This is the configuration template file used by the gga_init.py gga_load_data.py and run_workflow.py scripts # It contains (sensible) variables to set up different docker services and should not be committed in production # "all" section contains variables used by several services at once or the paths to import sensible files that cannot be procedurally generated/formatted using the scripts all: hostname: localhost # The hosting machine name dashboard_port: 8001 # The desired port (on the hosting machine) for the traefik container dashboard http_port: 8888 # The HTTP port docker will use on the hosting machine https_port: 8889 # The HTTPS port docker will use on the hosting machine. If present, docker will deploy stacks using an HTTPS configuration with authelia authentication proxy_ip: XXXXXXXXXXXX # IP of the upstream proxy (used by traefik) auth_hostname: XXXXXXXXXXXX # The authentication domain name, not required if running only using HTTP authelia_config_path: /path/to/authelia_config.yml # Path to the custom authelia configuration file # galaxy-specific environment variables galaxy: galaxy_default_admin_email: gga@galaxy.org galaxy_defaut_admin_user: gga galaxy_default_admin_password: password # galaxy_config_master_api_key: master webapollo_user: admin_apollo@galaxy.org webapollo_password: apollopass persist_galaxy_data: "True" # If True, docker data will be backed up galaxy_config_remote_user_maildomain: sb-roscoff.fr # The maildomain used by galaxy authentication # tripal-specific variables tripal: tripal_password: tripalpass # Tripal database password (also used by galaxy as an environment variable) banner_path: /home/fr2424/sib/alebars/projects/gga_load_data/misc/banner.png # Custom banner path tripal_theme_name: abims # Use this to use another theme tripal_theme_git_clone: http://gitlab.sb-roscoff.fr/abims/e-infra/tripal_abims.git # Use this to install another theme (cannot be named custom_theme_git_clone currently) # jbrowse-specific variables jbrowse: menu_url: "http://localhost:8888/" # If present, this variable is used to define jbrowse menu_url, if absent, will use https://hostname:https_port instead