Skip to content
Snippets Groups Projects

Merge upstream

Merged Merge upstream
dev into master
Merged Loraine Gueguen requested to merge dev into master
Viewing commit faa82134
Prev Next
Show latest version
2 files
+ 2
− 0
Compare changes
  • Side-by-side
  • Inline
Files
2
templates/page--front.tpl.php
+ 56
− 13
@@ -147,17 +147,43 @@
<?php endif; ?>
<?php if (getenv('ENABLE_BLAST')): ?>
<?php
if (getenv('ENABLE_BLAST') == "1")
$url = $GLOBALS['base_url'].'/blast';
else
$url = getenv('ENABLE_BLAST');
$blast_list = explode("&", getenv('ENABLE_BLAST'));
$blast_urls = array();
foreach ($blast_list as $item){
list($str1,$str2) = explode('=', $item, 2);
$name = "Blast";
if (strlen($str2) == 0){
if ($str1 == "1"){
$url = $GLOBALS['base_url'].'/blast';
}else{
$url = $str1;
}
}else{
$name = $str1;
$url = $str2;
}
$blast_urls[$name] = $url;
}
?>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Blast</a></li>
<?php if (count($blast_urls) > 1): ?>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46">
<a href="#">Blast</a>
<ul class="sub-menu">
<?php endif; ?>
<?php foreach ($blast_urls as $name => $url): ?>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46">
<a href="<?php echo $url; ?>" target="_blank"><?php echo "$name"; ?>
</a></li>
<?php endforeach; ?>
<?php if (count($blast_urls) > 1): ?>
</ul>
</li>
<?php endif; ?>
<?php endif; ?>
<?php if (getenv('ENABLE_JBROWSE')): ?>
<?php
if (getenv('ENABLE_JBROWSE') == "1")
$url = '/jbrowse';
$url = '/jbrowse/';
else
$url = getenv('ENABLE_JBROWSE');
?>
@@ -165,14 +191,29 @@
<?php endif; ?>
<?php if (getenv('ENABLE_APOLLO')): ?>
<?php
if (getenv('ENABLE_APOLLO') == "1")
$url = '/apollo';
else
if (getenv('ENABLE_APOLLO') == "1") {
$url = $GLOBALS['base_url'] . '/apollo';
$url_report = $GLOBALS['base_url'] . '/apollo_report';
}
else {
$url = getenv('ENABLE_APOLLO');
$url_report = $url . 'report';
}
foreach ($page['organisms'] as $org_id => $org) {
if (isset($org->version)) {
$apollo_org = $org->genus . ' ' . $org->species . ' ' . $org->version;
if (strpos($url, '?') !== false)
$url .= '&organism=' . $apollo_org;
else
$url .= 'annotator/loadLink?organism=' . $apollo_org;
break;
}
}
?>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">Apollo</a>
<li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Apollo</a>
<!-- <ul class="sub-menu">
<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $GLOBALS['base_url'].'/apollo_report'; ?>">Annotation report</a></li>
<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $url_report; ?>">Annotation report</a></li>
</ul>-->
</li>
<?php endif; ?>
@@ -229,7 +270,9 @@
<li id="menu-item-78" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-78"><a href="https://bipaa.genouest.org/is/lepidodb/">LepidoDB</a></li>
<li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="https://bipaa.genouest.org/is/coleoptera/">Coleoptera</a></li>
<li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="https://bipaa.genouest.org/is/crustacea/">Crustacea</a></li>-->
<li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="http://galaxy.sb-roscoff.fr/">Galaxy</a></li>
<li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://phaeoexplorer.sb-roscoff.fr">Phaeoexplorer</a></li>
<li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://abims.sb-roscoff.fr/resources/genomic_resources">Other genomic resources</a></li>
<!--<li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://galaxy.sb-roscoff.fr/">Galaxy</a></li>-->
<!--<li id="menu-item-138" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-138"><a href="https://bipaa.genouest.org/account/">BIPAA account</a></li>-->
</ul>
</li>
@@ -321,7 +364,7 @@
<?php include('/var/www/html/species_legend.html'); ?>
<?php endif; ?>
<p style="font-style:italic; margin:0; padding:0">Other organisms are available on the <a href="http://abims.sb-roscoff.fr/">ABiMS website</a>.</p>
<!--<p style="font-style:italic; margin:0; padding:0">Other organisms are available on the <a href="http://abims.sb-roscoff.fr/">ABiMS website</a>.</p>-->
</div>
<div id="front_analyses">