Merge upstream

• merge upstream
• remove galaxy link
• add link to phaeo wbesite and genomic resources
• remove "other organisms are available at"
• fix structural annotation feature count when there is no genes (count mRNA instead)
• update readme

templates/page--front.tpl.php

@@ -156,9 +156,11 @@
                                             $url = $GLOBALS['base_url'].'/blast';
                                         else
                                             $url = $str1;
+                                        endif;
                                     else
                                         $name = $str1;
                                         $url = $str2;
+                                    endif;
                                     $blast_urls[$name] = $url;
                                 endforeach;
                             ?>