<?php /** * @file * BIPAA's theme implementation to display a single Drupal page. * * The doctype, html, head and body tags are not in this template. Instead they * can be found in the html.tpl.php template normally located in the * modules/system directory. * * Available variables: * * General utility variables: * - $base_path: The base URL path of the Drupal installation. At the very * least, this will always default to /. * - $directory: The directory the template is located in, e.g. modules/system * or themes/bipaa. * - $is_front: TRUE if the current page is the front page. * - $logged_in: TRUE if the user is registered and signed in. * - $is_admin: TRUE if the user has permission to access administration pages. * * Site identity: * - $front_page: The URL of the front page. Use this instead of $base_path, * when linking to the front page. This includes the language domain or * prefix. * - $logo: The path to the logo image, as defined in theme configuration. * - $site_name: The name of the site, empty when display has been disabled * in theme settings. * - $site_slogan: The slogan of the site, empty when display has been disabled * in theme settings. * - $hide_site_name: TRUE if the site name has been toggled off on the theme * settings page. If hidden, the "element-invisible" class is added to make * the site name visually hidden, but still accessible. * - $hide_site_slogan: TRUE if the site slogan has been toggled off on the * theme settings page. If hidden, the "element-invisible" class is added to * make the site slogan visually hidden, but still accessible. * * Navigation: * - $main_menu (array): An array containing the Main menu links for the * site, if they have been configured. * - $secondary_menu (array): An array containing the Secondary menu links for * the site, if they have been configured. * - $breadcrumb: The breadcrumb trail for the current page. * * Page content (in order of occurrence in the default page.tpl.php): * - $title_prefix (array): An array containing additional output populated by * modules, intended to be displayed in front of the main title tag that * appears in the template. * - $title: The page title, for use in the actual HTML content. * - $title_suffix (array): An array containing additional output populated by * modules, intended to be displayed after the main title tag that appears in * the template. * - $messages: HTML for status and error messages. Should be displayed * prominently. * - $tabs (array): Tabs linking to any sub-pages beneath the current page * (e.g., the view and edit tabs when displaying a node). * - $action_links (array): Actions local to the page, such as 'Add menu' on the * menu administration interface. * - $feed_icons: A string of all feed icons for the current page. * - $node: The node object, if there is an automatically-loaded node * associated with the page, and the node ID is the second argument * in the page's path (e.g. node/12345 and node/12345/revisions, but not * comment/reply/12345). * * Regions: * - $page['header']: Items for the header region. * - $page['featured']: Items for the featured region. * - $page['highlighted']: Items for the highlighted content region. * - $page['help']: Dynamic help text, mostly for admin pages. * - $page['content']: The main content of the current page. * - $page['sidebar_first']: Items for the first sidebar. * - $page['triptych_first']: Items for the first triptych. * - $page['triptych_middle']: Items for the middle triptych. * - $page['triptych_last']: Items for the last triptych. * - $page['footer_firstcolumn']: Items for the first footer column. * - $page['footer_secondcolumn']: Items for the second footer column. * - $page['footer_thirdcolumn']: Items for the third footer column. * - $page['footer_fourthcolumn']: Items for the fourth footer column. * - $page['footer']: Items for the footer region. * * @see template_preprocess() * @see template_preprocess_page() * @see template_process() * @see bipaa_process_page() * @see html.tpl.php */ ?> <header id="masthead" class="site-header" role="banner"> <a class="home-link" href="<?php echo $GLOBALS['base_url'].'/'; ?>" title="ABiMS" rel="home"> </a> <div id="navbar" class="navbar"> <nav id="site-navigation" class="navigation main-navigation" role="navigation"> <button class="menu-toggle">Menu</button> <a class="screen-reader-text skip-link" href="#content" title="Skip to content">Skip to content</a> <div class="menu-main-container"> <ul id="primary-menu" class="nav-menu"> <?php if (getenv('ENABLE_ORTHOLOGY')): ?> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="<?php echo $GLOBALS['base_url']; ?>/search/phylotree">Gene families</a></li> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="<?php echo $GLOBALS['base_url']; ?>/chado/organism">Organisms</a></li> <?php elseif (getenv('ENABLE_NO_CHADO_DATA')): ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-home menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].'/'; ?>"> <?php if (getenv('SITE_NAME')) echo getenv('SITE_NAME'); else echo "Home"; ?> </a> </li> <?php else: ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-home menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].'/'; ?>"> <?php if (getenv('SITE_NAME')) echo getenv('SITE_NAME'); else echo "Home"; ?> </a> <ul class="sub-menu"> <li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $GLOBALS['base_url']; ?>/chado/analysis">Analyses</a></li> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="<?php echo $GLOBALS['base_url']; ?>/chado/feature">Features</a></li> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="<?php echo $GLOBALS['base_url']; ?>/chado/organism">Organisms</a></li> <!--li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="<?php echo $GLOBALS['base_url']; ?>/elastic_search">Advanced search</a></li--> </ul> </li> <?php endif; ?> <?php if (getenv('ENABLE_GO')): ?> <?php if (count($page['organisms']) > 1): ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"> <a href="#">GO Reports</a> <ul class="sub-menu"> <?php endif; ?> <?php foreach ($page['organisms'] as $org_id => $org): ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url']."/organism/".str_replace(' ', '-', $org->genus)."/".str_replace(' ', '-', $org->species)."?pane=GO"; ?>"> <?php if (count($page['organisms']) > 1): ?> <?php echo "$org->genus $org->species"; ?> <?php else: ?> GO Report <?php endif; ?> </a></li> <?php endforeach; ?> <?php if (count($page['organisms']) > 1): ?> </ul> </li> <?php endif; ?> <?php endif; ?> <?php if (getenv('ENABLE_BLAST')): ?> <?php $blast_list = explode("&", getenv('ENABLE_BLAST')); $blast_urls = array(); foreach ($blast_list as $item){ list($str1,$str2) = explode('=', $item, 2); $name = "Blast"; if (strlen($str2) == 0){ if ($str1 == "1"){ $url = $GLOBALS['base_url'].'/blast'; }else{ $url = $str1; } }else{ $name = $str1; $url = $str2; } $blast_urls[$name] = $url; } ?> <?php if (count($blast_urls) > 1): ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"> <a href="#">Blast</a> <ul class="sub-menu"> <?php endif; ?> <?php foreach ($blast_urls as $name => $url): ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"> <a href="<?php echo $url; ?>" target="_blank"><?php echo "$name"; ?> </a></li> <?php endforeach; ?> <?php if (count($blast_urls) > 1): ?> </ul> </li> <?php endif; ?> <?php endif; ?> <?php if (getenv('ENABLE_JBROWSE')): ?> <?php if (getenv('ENABLE_JBROWSE') == "1") $url = '/jbrowse/'; else $url = getenv('ENABLE_JBROWSE'); ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">JBrowse</a></li> <?php endif; ?> <?php if (getenv('ENABLE_APOLLO')): ?> <?php if (getenv('ENABLE_APOLLO') == "1") { $url = $GLOBALS['base_url'] . '/apollo'; $url_report = $GLOBALS['base_url'] . '/apollo_report'; } else { $url = getenv('ENABLE_APOLLO'); $url_report = $url . 'report'; } foreach ($page['organisms'] as $org_id => $org) { if (isset($org->version)) { $apollo_org = $org->genus . ' ' . $org->species . ' ' . $org->version; if (strpos($url, '?') !== false) $url .= '&organism=' . $apollo_org; else $url .= 'annotator/loadLink?organism=' . $apollo_org; break; } } ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Apollo</a> <!-- <ul class="sub-menu"> <li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="<?php echo $url_report; ?>">Annotation report</a></li> </ul>--> </li> <?php endif; ?> <?php if (getenv('ENABLE_CIRCOS')): ?> <?php if (getenv('ENABLE_CIRCOS') == "1") $url = $GLOBALS['base_url'].'/circos'; else $url = getenv('ENABLE_CIRCOS'); ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Synteny</a></li> <?php endif; ?> <?php if (getenv('ENABLE_AUREME')): ?> <?php if (getenv('ENABLE_AUREME') == "1") $url = $GLOBALS['base_url'].'/aureme'; else $url = getenv('ENABLE_AUREME'); ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Metabolic model</a></li> <?php endif; ?> <?php if (getenv('ENABLE_APHIDCYC')): ?> <?php if (getenv('ENABLE_APHIDCYC') == "1") $url = 'http://aphidcyc.cycadsys.org/'; else $url = getenv('ENABLE_APHIDCYC'); ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">AphidCyc</a></li> <?php endif; ?> <?php if (getenv('ENABLE_WIKI')): ?> <?php if (getenv('ENABLE_WIKI') == "1") $url = $GLOBALS['base_url'].'/wiki/'; else $url = getenv('ENABLE_WIKI'); ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $url; ?>">Wiki</a></li> <?php endif; ?> <?php if (getenv('ENABLE_DOWNLOAD')): ?> <?php if (getenv('ENABLE_DOWNLOAD') == "1") $url = '/download'; else $url = getenv('ENABLE_DOWNLOAD'); ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="<?php echo $GLOBALS['base_url'].$url; ?>">Download</a></li> <?php endif; ?> <li id="menu-item-46" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-has-children menu-item-46"><a href="http://abims.sb-roscoff.fr">ABiMS</a> <ul class="sub-menu"> <!--<li id="menu-item-43" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-43"><a href="https://bipaa.genouest.org/is/aphidbase/">AphidBase</a></li> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="https://bipaa.genouest.org/is/parwaspdb/">ParWaspDB</a></li> <li id="menu-item-78" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-78"><a href="https://bipaa.genouest.org/is/lepidodb/">LepidoDB</a></li> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="https://bipaa.genouest.org/is/coleoptera/">Coleoptera</a></li> <li id="menu-item-44" class="menu-item menu-item-type-post_type menu-item-object-page menu-item-has-children menu-item-44"><a href="https://bipaa.genouest.org/is/crustacea/">Crustacea</a></li>--> <li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://phaeoexplorer.sb-roscoff.fr/">Phaeoexplorer</a></li> <li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://rhodoexplorer.sb-roscoff.fr/">Rhodoexplorer</a></li> <li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://abims.sb-roscoff.fr/resources/genomic_resources">Other genomic resources</a></li> <!--<li id="menu-item-130" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-130"><a href="https://galaxy.sb-roscoff.fr/">Galaxy</a></li>--> <!--<li id="menu-item-138" class="menu-item menu-item-type-custom menu-item-object-custom menu-item-138"><a href="https://bipaa.genouest.org/account/">BIPAA account</a></li>--> </ul> </li> </ul> </div> <?php if (!getenv('ENABLE_ORTHOLOGY')): ?> <?php print render($page['header']["tripal_elasticsearch_elasticsearch_website_search_box"]); ?> <?php endif; ?> </nav><!-- #site-navigation --> </div><!-- #navbar --> </header><!-- #masthead --> <div id="main" class="site-main"> <div id="primary" class="content-area"> <div id="content" class="site-content" role="main"> <article class="page type-page status-publish hentry"> <div class="entry-content"> <?php if ($page['highlighted']): ?><div id="highlighted"><?php print render($page['highlighted']); ?></div><?php endif; ?> <a id="main-content"></a> <header class="entry-header"> <?php print render($title_prefix); ?> <h1 class="entry-title" id="page-title"> <?php print getenv('SITE_NAME'); ?> </h1> <?php print render($title_suffix); ?> </header> <?php if ($tabs): ?> <div class="tabs"> <?php print render($tabs); ?> </div> <?php endif; ?> <?php print render($page['help']); ?> <?php if ($action_links): ?> <ul class="action-links"> <?php print render($action_links); ?> </ul> <?php endif; ?> <?php if (file_exists('/welcome.html')) include('/welcome.html'); ?> <?php if (getenv('ENABLE_ORTHOLOGY')): ?> <p>This section contains orthology data.</p> <p>Browse the available <a href="<?php echo $GLOBALS['base_url']; ?>/search/phylotree">gene families</a></p> <?php elseif (getenv('ENABLE_NO_CHADO_DATA')): ?> <?php else: ?> <?php $search_form = drupal_get_form('website_search_box_form'); print drupal_render($search_form); ?> <?php endif; ?> <div id="front_content"> <div id="front_organisms"> <h2>Available organisms</h2> <?php foreach ($page['organisms'] as $org_id => $org): ?> <div class="tripal-organism-teaser tripal-teaser"> <div class="tripal-organism-teaser-title tripal-teaser-title"> <p class='data_highlight'> <?php print "<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $org->genus)."/".str_replace(' ', '-', $org->species)."\"><i>$org->common_name</i>"; print "</a>"; ?> </p> </div> <div class="tripal-organism-teaser-text tripal-teaser-text"><?php print substr($org->comment, 0, 650); if (strlen($org->comment) > 650) { print "... "; } ?> </div> </div> <?php endforeach; ?> <?php if (file_exists('/var/www/html/species.png')): ?> <img src="<?php echo $GLOBALS['base_url']; ?>/species.png" width=200 height=150 class="org_img" /> <?php elseif (file_exists('/var/www/html/species.jpg')): ?> <img src="<?php echo $GLOBALS['base_url']; ?>/species.jpg" width=200 height=150 class="org_img" /> <?php endif; ?> <?php if (file_exists('/var/www/html/species_legend.html')): ?> <?php include('/var/www/html/species_legend.html'); ?> <?php endif; ?> <!--<p style="font-style:italic; margin:0; padding:0">Other organisms are available on the <a href="http://abims.sb-roscoff.fr/">ABiMS website</a>.</p>--> </div> <div id="front_analyses"> <h2>Available datasets</h2> <?php foreach ($page['analyses'] as $org_id => $ans): ?> <?php if ($page['analyses'] > 1): ?> <?php if (($org_id != "multi") && ($org_id != "none")): ?> <h4> <?php $org = $page['organisms'][$org_id]; print "<i>$org->common_name</i>"; ?> </h4> <?php else: ?> <h4>Other analyses</h4> <?php endif; ?> <div class="sub_analysis"> <?php else: ?> <div class="no_sub_analysis"> <?php endif; ?> <?php foreach ($ans as $an_num => $an): ?> <?php if ($an->human_kind == 'assembly'): ?> <div class="tripal_analysis_blast-teaser tripal-teaser"> <div class="tripal-analysis-blast-teaser-title tripal-teaser-title"> <?php print "Genome assembly: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>"; ?></span> </div> <div class="tripal-analysis-blast-teaser-text tripal-teaser-text"><?php print substr($an->description, 0, 650); if (strlen($an->description) > 650) { print "... " . l("[more]", "node/$an_num"); } print "<p class=\"sub_analysis\"><b>" .$an->feature_count . "</b> sequences"; print ", performed on <b>".explode(' ', $an->timeexecuted)[0]."</b></p>"; ?> </div> </div> <?php else: ?> <div class="tripal_analysis_blast-teaser tripal-teaser"> <div class="tripal-analysis-blast-teaser-title tripal-teaser-title"> <?php if ($an->human_kind == 'functional') { print "Functional annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>"; if (getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an->name, $m)) { print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]"; } } else if ($an->human_kind == 'structural') { print "Structural annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>"; } else if ($an->human_kind == 'transcriptome') { print "Transcriptome: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>"; } else { print "Analysis: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num."\">".$an->name."</a>"; } ?></span> </div> <div class="tripal-analysis-blast-teaser-text tripal-teaser-text"><?php print substr($an->description, 0, 650); if (strlen($an->description) > 650) { print "... "; } if ($an->human_kind == 'structural') { print "<p class=\"sub_analysis\"><b>" .$an->feature_count . "</b> genes"; } else if ($an->human_kind == 'functional') { print "<p class=\"sub_analysis\"><b>" .$an->feature_count . "</b> annotated proteins"; } else { print "<p class=\"sub_analysis\"><b>" .$an->feature_count . "</b> features"; } print ", performed on <b>".explode(' ', $an->timeexecuted)[0]."</b></p>"; ?> </div> </div> <?php endif; ?> <?php if (count($an->children) >= 1): ?> <div class="sub_analysis"> <?php foreach ($an->children as $an_num2 => $an2): ?> <div class="tripal_analysis_blast-teaser tripal-teaser"> <div class="tripal-analysis-blast-teaser-title tripal-teaser-title"> <?php if ($an2->human_kind == 'functional') { print "Functional annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num2."\">".$an2->name."</a>"; if (getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an2->name, $m)) { print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]"; } } else if ($an2->human_kind == 'structural') { print "Structural annotation: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num2."\">".$an2->name."</a>"; } else if ($an2->human_kind == 'transcriptome') { print "Transcriptome: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num2."\">".$an2->name."</a>"; } else { print "Analysis: <span class='data_highlight'><a href=\"".$GLOBALS['base_url']."/analysis/".$an_num2."\">".$an2->name."</a>"; } ?></span> </div> <div class="tripal-analysis-blast-teaser-text tripal-teaser-text"><?php print substr($an2->description, 0, 650); if (strlen($an2->description) > 650) { print "... "; } if ($an2->human_kind == 'structural') { print "<p class=\"sub_analysis\"><b>" .$an2->feature_count . "</b> genes"; } else if ($an2->human_kind == 'functional') { print "<p class=\"sub_analysis\"><b>" .$an2->feature_count . "</b> annotated proteins"; } else { print "<p class=\"sub_analysis\"><b>" .$an2->feature_count . "</b> features"; } print ", performed on <b>".explode(' ', $an2->timeexecuted)[0]."</b></p>"; ?> </div> </div> <?php if (count($an2->children) >= 1): ?> <div class="sub_analysis"> <?php foreach ($an2->children as $an_num3 => $an3): ?> <div class="tripal_analysis_blast-teaser tripal-teaser"> <div class="tripal-analysis-blast-teaser-title tripal-teaser-title"> <p class="data_highlight"><?php print "<a href=\"".$GLOBALS['base_url']."/analysis/".$an_num3."\">".$an3->name."</a>"; ?> <?php if (getenv('ENABLE_GO') && preg_match('/.*Blast2GO.*/i', $an3->name, $m)) { print "[<a href=\"".$GLOBALS['base_url']."/organism/".str_replace(' ', '-', $page['organisms'][$org_id]->genus)."/".str_replace(' ', '-', $page['organisms'][$org_id]->species)."?pane=GO\">Report</a>]"; } ?></p> </div> <div class="tripal-analysis-blast-teaser-text tripal-teaser-text"><?php print substr($an3->description, 0, 650); if (strlen($an3->description) > 650) { print "... "; } print "<p class=\"sub_analysis\"><b>" .$an3->feature_count . "</b> annotated proteins"; print ", performed on <b>".explode(' ', $an3->timeexecuted)[0]."</b></p>"; ?> </div> </div> <?php endforeach; ?> </div> <?php endif; ?> <?php endforeach; ?> </div> <?php endif; ?> <?php endforeach; ?> </div> <?php endforeach; ?> </div> </div> <?php if ($page['sidebar_second']): ?> <div id="sidebar-second" class="column sidebar"><div class="section"> <?php print render($page['sidebar_second']); ?> </div></div> <!-- /.section, /#sidebar-second --> <?php endif; ?> </div><!-- #entry-content --> </article> </div><!-- #content --> </div><!-- #primary --> <div id="tertiary" class="sidebar-container" role="complementary"> <div class="sidebar-inner"> <div class="widget-area"> </div><!-- .widget-area --> </div><!-- .sidebar-inner --> </div><!-- #tertiary --> </div><!-- #main --> <footer id="colophon" class="site-footer" role="contentinfo"> <div id="secondary" class="sidebar-container" role="complementary"> <div class="widget-area masonry" style="position: relative; height: 150px;"> <aside id="meta-2" class="widget widget_meta masonry-brick" style="position: absolute; left: 248px; top: 0px;"><h3 class="widget-title">Links</h3> <ul> <?php if (!$logged_in): ?> <li><a href="<?php echo $GLOBALS['base_url']."/user" ?>">Log in</a></li> <?php endif; ?> <!--<li><a href="<?php echo $GLOBALS['base_url']."/rss.xml" ?>">Content <abbr title="Really Simple Syndication">RSS</abbr></a></li>--> <li><a href="http://abims.sb-roscoff.fr/">ABiMS website</a></li> </aside> <aside id="text-4" class="widget widget_text masonry-brick" style="position: absolute; left: 496px; top: 0px;"> <div class="textwidget"> <img src="<?php echo $GLOBALS['base_url']."/".drupal_get_path('theme', 'abims');?>/images/abims/cnrs.png" height="50"> <img src="<?php echo $GLOBALS['base_url']."/".drupal_get_path('theme', 'abims');?>/images/abims/su.png" height="50" style="padding-left: 10px;"> </div> </aside> </div><!-- .widget-area --> </div><!-- #secondary -->