<?php $feature = $variables['node']->feature; if (preg_match('/v2.1b/', $feature->analysisfeature[0]->analysis_id->name) >= 1) { echo ""; } else if ($feature->type_id->name == 'polypeptide') { $target_id = $feature->uniquename; echo '<a href="' . getenv('ENABLE_ORTHOLOGY_LINKS') . 'chado_gene_phylotree?gene_name=' . $target_id . '">View orthology data for ' . $feature->uniquename . '</a>'; } else if ($feature->type_id->name == 'mRNA') { foreach ($feature->feature_relationship->object_id as $rel) { if ($rel->subject_id->type_id->name == 'polypeptide') { $target_id = $rel->subject_id->uniquename; echo '<a href="' . getenv('ENABLE_ORTHOLOGY_LINKS') . 'chado_gene_phylotree?gene_name=' . $target_id . '">View orthology data for ' . $feature->uniquename . '</a>'; break; } } } else if ($feature->type_id->name == 'gene') { foreach ($feature->feature_relationship->object_id as $rel) { if ($rel->subject_id->type_id->name == 'mRNA') { $mrna_feat = chado_expand_var($rel->subject_id, 'table', 'feature_relationship'); foreach ($mrna_feat->feature_relationship->object_id as $rel_g) { if ($rel_g->subject_id->type_id->name == 'polypeptide') { $target_id = $rel_g->subject_id->uniquename; echo '<p><a href="' . getenv('ENABLE_ORTHOLOGY_LINKS') . 'chado_gene_phylotree?gene_name=' . $target_id . '">View orthology data for ' . $rel_g->subject_id->uniquename . '</a></p>'; break; } } } } }