BIPAA theme for Tripal
Written for use with the
Configuration
The theme can be configured using environment variables, which can be configured from the docker-compose.yml file.
version: "2"
services:
web:
image: tripal:latest
[...]
environment:
THEME_GIT_CLONE: "https://gitlab.inria.fr/abretaud/tripal_bipaa.git"
THEME: "bipaa"
SITE_NAME: "Spodoptera frugiperda" # Set this to the name of the species
ENABLE_BLAST: 1 # 1 to add links to blast form, 0 to disable it
ENABLE_JBROWSE: 1 # 1 to add links to jbrowse, 0 to disable it
ENABLE_APOLLO: 1 # 1 to add links to apollo, 0 to disable it
JBROWSE_LINKS: "SFRU_RICE>rice" # correspondance between contig name prefix and jbrowse dataset id, example: "SFRU_RICE>rice_1;SFRU_CORN>corn_2"
# By default APOLLO_LINKS == JBROWSE_LINKS
APOLLO_LINKS: "SFRU_RICE>rice" # correspondance between contig name prefix and apollo dataset id, example: "SFRU_RICE>rice_1;SFRU_CORN>corn_2"
[...]